RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TEPSINQ96N21 525 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ZNF471Q9BX82 626 aaPredicted RBP19.59■□□□□ 0.73
UPF1-207ENST00000599848 OR51I1Q9H343 314 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 SNTG1Q9NSN8 517 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 FAM149AA5PLN7 773 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 UBL4AP11441 157 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 RAC2P15153 192 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 POLR2HP52434 150 aaKnown RBP19.59■□□□□ 0.73
UPF1-207ENST00000599848 ZFAND4Q86XD8 727 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 NAT14Q8WUY8 206 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 OR52B2Q96RD2 323 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ICKQ9UPZ9 632 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 DHDHQ9UQ10 334 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 GXYLT2A0PJZ3 443 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 C2orf78A6NCI8 922 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 BCAT2O15382 392 aaPredicted RBP19.59■□□□□ 0.73
UPF1-207ENST00000599848 SDHBP21912 280 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 HMGCLP35914 325 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 CEBPGP53567 150 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 YPEL5P62699 121 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 HNRNPA1L2Q32P51 320 aaKnown RBP19.59■□□□□ 0.73
UPF1-207ENST00000599848 BAIAP2L2Q6UXY1 529 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 CBARPQ8N350 705 aaPredicted RBP19.59■□□□□ 0.73
UPF1-207ENST00000599848 RELTQ969Z4 430 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 TMEM80Q96HE8 168 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 C2orf72A6NCS6 295 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 GFRA2O00451 464 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 ACOX3O15254 700 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 CREG1O75629 220 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 MAGEA2P43356 314 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 MOGQ16653 247 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 PARP8Q8N3A8 854 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 OR2T4Q8NH00 348 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 PROKR1Q8TCW9 393 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 MUCL1Q96DR8 90 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 DYNLRB1Q9NP97 96 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 MTMR10Q9NXD2 777 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 COMMD3Q9UBI1 195 aa19.59■□□□□ 0.73
UPF1-207ENST00000599848 FLRT2O43155 660 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 LEPRP48357 1165 aaKnown RBP19.58■□□□□ 0.73
UPF1-207ENST00000599848 IRF9Q00978 393 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 DLK2Q6UY11 383 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 Q6ZSR6 202 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 SHFQ7M4L6 423 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 OR9K2Q8NGE7 335 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 A0A096LPI6 279 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 OR2T1O43869 369 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 PRKD3O94806 890 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 GNRHRP30968 328 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 PSPHP78330 225 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 VN1R2Q8NFZ6 395 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 OR5L1Q8NGL2 311 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 THAP3Q8WTV1 239 aaPredicted RBP19.58■□□□□ 0.73
UPF1-207ENST00000599848 HSPBAP1Q96EW2 488 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 SCRN2Q96FV2 425 aa19.58■□□□□ 0.73
UPF1-207ENST00000599848 TOE1Q96GM8 510 aaKnown RBP19.58■□□□□ 0.73
UPF1-207ENST00000599848 C11orf98E9PRG8 122 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 H3BNC9 293 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 RNF225M0QZC1 329 aaPredicted RBP19.58■□□□□ 0.72
UPF1-207ENST00000599848 CDC123O75794 336 aaPredicted RBP19.58■□□□□ 0.72
UPF1-207ENST00000599848 MC3RP41968 323 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 ADAM15Q13444 863 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 SCGB2B2Q4G0G5 96 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.58■□□□□ 0.72
UPF1-207ENST00000599848 HDAC2Q92769 488 aaKnown RBP19.58■□□□□ 0.72
UPF1-207ENST00000599848 ZBTB20Q9HC78 741 aaPredicted RBP19.58■□□□□ 0.72
UPF1-207ENST00000599848 ACTR3BQ9P1U1 418 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 A0A1B0GTW7 788 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 PLSCR5A0PG75 271 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 KLF11O14901 512 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 OPN1SWP03999 348 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 TPTEP56180 551 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 BNIP3Q12983 259 aa19.58■□□□□ 0.72
UPF1-207ENST00000599848 CCNKO75909 580 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 PRKCAP17252 672 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 TUBB3Q13509 450 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 ESCO2Q56NI9 601 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 DCDC5Q6ZRR9 648 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 MRPL43Q8N983 215 aaKnown RBP19.57■□□□□ 0.72
UPF1-207ENST00000599848 OR52P1PQ8NH57 321 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 NANSQ9NR45 359 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 BHMG1C9JSJ3 638 aaPredicted RBP19.57■□□□□ 0.72
UPF1-207ENST00000599848 MSX2P35548 267 aaPredicted RBP19.57■□□□□ 0.72
UPF1-207ENST00000599848 SCGB1C1Q8TD33 95 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 HHIPQ96QV1 700 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 MCOLN1Q9GZU1 580 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 SLC2A6Q9UGQ3 507 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 TANKQ92844 425 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 SLC22A4Q9H015 551 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 SLC6A15Q9H2J7 730 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 DPAGT1Q9H3H5 408 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 ALG5Q9Y673 324 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 SDC3O75056 442 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 DCDC1P59894 354 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 TRAPPC6BQ86SZ2 158 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 OR8J3Q8NGG0 315 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 C2orf42Q9NWW7 574 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 OR1A2Q9Y585 309 aa19.57■□□□□ 0.72
UPF1-207ENST00000599848 FMN2Q9NZ56 1722 aa19.56■□□□□ 0.72
UPF1-207ENST00000599848 PNMTP11086 282 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms