RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SMN1Q16637 294 aaKnown RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 EXOC3L2Q2M3D2 409 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 ABI3BPQ7Z7G0 1075 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 ZNF761Q86XN6 746 aaPredicted RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 SLC5A8Q8N695 610 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 NATD1Q8N6N6 113 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 OR9Q2Q8NGE9 314 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 APOBEC4Q8WW27 367 aaKnown RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 OR51I1Q9H343 314 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 FANCEQ9HB96 536 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 ZCCHC3Q9NUD5 404 aaKnown RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 TRNAU1APQ9NX07 287 aaKnown RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 EHD3Q9NZN3 535 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 NDRG4Q9ULP0 352 aaKnown RBP13.68□□□□□ -0.22
VRK3-217ENST00000599538 MYO15AQ9UKN7 3530 aa13.68□□□□□ -0.22
VRK3-217ENST00000599538 A0A0J9YVX5 310 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GSAPA4D1B5 854 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 OR2A25A4D2G3 310 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 PCDH17O14917 1159 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 UGT2B11O75310 529 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 MFN2O95140 757 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ZNF888P0CJ79 500 aaPredicted RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 PVRP15151 417 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 CD247P20963 164 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 XCR1P46094 333 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GSTM5P46439 218 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 LSSP48449 732 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GSSP48637 474 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 LIM2P55344 173 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ESRRGP62508 458 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 SFSWAPQ12872 951 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 NPRL3Q12980 569 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 EIF2B5Q13144 721 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 GAS6Q14393 721 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 MLC1Q15049 377 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 CCDC85BQ15834 202 aaPredicted RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 GPR107Q5VW38 600 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 FCRL6Q6DN72 434 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 CHRDL2Q6WN34 429 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 COMTD1Q86VU5 262 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ARMC8Q8IUR7 673 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 SPARTQ8N0X7 666 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GIPC3Q8TF64 312 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 XAGE5Q8WWM1 108 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GEMIN6Q8WXD5 167 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 ISOC1Q96CN7 298 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 BBS4Q96RK4 519 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 NIPSNAP1Q9BPW8 284 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 FAIM2Q9BWQ8 316 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GPR174Q9BXC1 333 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 TWSG1Q9GZX9 223 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 THSD1Q9NS62 852 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ACER3Q9NUN7 267 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 EVA1BQ9NVM1 165 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 GMPPBQ9Y5P6 360 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 LOC105369274A0A096LPK9 316 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 LOC102723532A0A0G2JNH3 316 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 FFAR1O14842 300 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ADAMDEC1O15204 470 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 PROM1O43490 865 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 KDM1AO60341 852 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 CPNE6O95741 557 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 MAPK10P53779 464 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 RPP38P78345 283 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 C1orf61Q13536 156 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ELOAQ14241 798 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 GPR153Q6NV75 609 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 B3GNT8Q7Z7M8 397 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 RBM45Q8IUH3 476 aaKnown RBP13.67□□□□□ -0.22
VRK3-217ENST00000599538 OR4N4Q8N0Y3 316 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 OR4D11Q8NGI4 311 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ZCCHC10Q8TBK6 192 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 OR2A5Q96R48 311 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 ACTR10Q9NZ32 417 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 HS3ST3A1Q9Y663 406 aa13.67□□□□□ -0.22
VRK3-217ENST00000599538 C5orf58C9J3I9 102 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 E9PQ18 207 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 FAM227AF5H4B4 570 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 PRAMEF26H0Y7S4 382 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ABCB7O75027 752 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 CHRNB1P11230 501 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 POU2F1P14859 743 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 MATN1P21941 496 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 PPP1CAP62136 330 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ROR2Q01974 943 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 ILF3Q12906 894 aaKnown RBP eCLIP13.66□□□□□ -0.22
VRK3-217ENST00000599538 KEAP1Q14145 624 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 SKIV2LQ15477 1246 aaKnown RBP13.66□□□□□ -0.22
VRK3-217ENST00000599538 BROXQ5VW32 411 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 KIAA0895LQ68EN5 471 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 FRMPD2BQ6IN97 320 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 SLC48A1Q6P1K1 146 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TMEM107Q6UX40 140 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ZNF605Q86T29 641 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 ASPGQ86U10 573 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 LGI4Q8N135 537 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 TBC1D19Q8N5T2 526 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 OR10G2Q8NGC3 310 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 GPBAR1Q8TDU6 330 aa13.66□□□□□ -0.22
VRK3-217ENST00000599538 UTP15Q8TED0 518 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms