RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 C17orf53Q8N3J3 647 aaPredicted RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 MARVELD2Q8N4S9 558 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 TMEM251Q8N6I4 163 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 ATP6V1E2Q96A05 226 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 PPWD1Q96BP3 646 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 C14orf79Q96F83 325 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 FBXL20Q96IG2 436 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 GAL3ST4Q96RP7 486 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 ERVK-6Q9BXR3 956 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 VPS11Q9H270 941 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 LDAHQ9H6V9 325 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 IPPKQ9H8X2 491 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 RYDENQ9NUL5 291 aaKnown RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 BOKQ9UMX3 212 aaPredicted RBP9.06□□□□□ -0.96
VRK3-216ENST00000599342 ERVK-19Q9WJR5 959 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 ATG4BQ9Y4P1 393 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 IKBKGQ9Y6K9 419 aa9.06□□□□□ -0.96
VRK3-216ENST00000599342 A0A0A6YYD5 115 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ATP6AP2A0A1C7CYW4 349 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 LRRC14BA6NHZ5 514 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 OR6C76A6NM76 312 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 FOXO6A8MYZ6 492 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 PROM1O43490 865 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 KLK8O60259 260 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ZNF354AO60765 605 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 ATP6AP2O75787 350 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SIX3O95343 332 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 CLDN9O95484 217 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 GPR75O95800 540 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 IGHG3P01860 377 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ALDOAP04075 364 aaKnown RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 IGKV3-11P04433 115 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 FAM58BPP0C7Q3 252 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SERPINB3P29508 390 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 MAN2A2P49641 1150 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 CCNG1P51959 295 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 GUCY2DQ02846 1103 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TLE4Q04727 773 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 PMPCAQ10713 525 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 CUL3Q13618 768 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ZNF267Q14586 743 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 SLC10A1Q14973 349 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SPRED3Q2MJR0 410 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 GXYLT1Q4G148 440 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TECRLQ5HYJ1 363 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 WLSQ5T9L3 541 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 C6orf163Q5TEZ5 329 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 PRAMEF20Q5VT98 475 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TTC19Q6DKK2 380 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 ZNF585AQ6P3V2 769 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TAOK1Q7L7X3 1001 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 RPRMLQ8N4K4 120 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SLC15A4Q8N697 577 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 PTGR2Q8N8N7 351 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 L3MBTL4Q8NA19 623 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 FAM13CQ8NE31 585 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 OR5M9Q8NGP3 310 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 OR10Q1Q8NGQ4 319 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 RIT1Q92963 219 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SARAFQ96BY9 339 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SPACA9Q96E40 222 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 LRRC1Q9BTT6 524 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ENKD1Q9H0I2 346 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ACSS3Q9H6R3 686 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 DDX31Q9H8H2 851 aaKnown RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 KCNJ16Q9NPI9 418 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 PNPLA3Q9NST1 481 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ZDHHC18Q9NUE0 388 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TUBA8Q9NY65 449 aaPredicted RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 NINJ2Q9NZG7 142 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 ACAD8Q9UKU7 415 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 TMCO1Q9UM00 188 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 RNF6Q9Y252 685 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 RNF11Q9Y3C5 154 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 HRH3Q9Y5N1 445 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 LIPGQ9Y5X9 500 aa9.05□□□□□ -0.96
VRK3-216ENST00000599342 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.05□□□□□ -0.96
VRK3-216ENST00000599342 TRGV5A0A0B4J1U4 118 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 A0A1B0GVC2 190 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 HMX2A2RU54 273 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 NKX2-6A6NCS4 301 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 GLOD5A6NK44 160 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 CAPN14A8MX76 684 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 HRKO00198 91 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 FOXE1O00358 373 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 AQP7O14520 342 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 TMPRSS11DO60235 418 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 SUSD5O60279 629 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 SMIM24O75264 130 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 EEDO75530 441 aaKnown RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 URI1O94763 535 aaPredicted RBP9.04□□□□□ -0.96
VRK3-216ENST00000599342 ACSL3O95573 720 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 AIFM1O95831 613 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 RBP1P09455 135 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 CAPN3P20807 821 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 ACVR2AP27037 513 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 PIK3R1P27986 724 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 BSGP35613 385 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 PIGAP37287 484 aa9.04□□□□□ -0.96
VRK3-216ENST00000599342 NR0B1P51843 470 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms