RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 EFCAB11Q9BUY7 163 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 SPNS1Q9H2V7 528 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 NT5DC2Q9H857 520 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 ZDHHC2Q9UIJ5 367 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF490Q9ULM2 529 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 RNF11Q9Y3C5 154 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 TSC22D4Q9Y3Q8 395 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 HRH3Q9Y5N1 445 aa12.99□□□□□ -0.33
SHKBP1-218ENST00000598907 MXRA5Q9NR99 2828 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 A0A1B0GTH9 108 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 HYKKA2RU49 373 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 H0YIV9 168 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 SMAD7O15105 426 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 CDC40O60508 579 aaKnown RBP eCLIP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 EDF1O60869 148 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 SEC24DO94855 1032 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 ATE1O95260 518 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 HOXC12P31275 282 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 LSP1P33241 339 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 CD96P40200 585 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 CCR8P51685 355 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 FOXA1P55317 472 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 DLX5P56178 289 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 AP2B1P63010 937 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 REEP5Q00765 189 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 LAPTM5Q13571 262 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 NAA25Q14CX7 972 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 UGT3A2Q3SY77 523 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 TCTE1Q5JU00 501 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 ACER2Q5QJU3 275 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 FIGLAQ6QHK4 219 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 TMPRSS11BQ86T26 416 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 LAS2Q8IYD9 372 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 CPSF7Q8N684 471 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF781Q8N8C0 355 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 SCMH1Q96GD3 660 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 SHCBP1LQ9BZQ2 653 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 PITHD1Q9GZP4 211 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF700Q9H0M5 742 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 ACTR8Q9H981 624 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 DMRT3Q9NQL9 472 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 TRPC4Q9UBN4 977 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 TRAF6Q9Y4K3 522 aa12.98□□□□□ -0.33
SHKBP1-218ENST00000598907 IGHV3-20A0A0C4DH32 117 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 A0A1W2PQ72 361 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 SERTM1A2A2V5 107 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 AZIN1O14977 448 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 NRP2O60462 931 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 SHOX2O60902 331 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 EIF2S1P05198 315 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 UROSP10746 265 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 RPL14P50914 215 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 NUP107P57740 925 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 GNGT1P63211 74 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 PMPCAQ10713 525 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 MAPKAPK3Q16644 382 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM214AQ32MH5 1076 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 ZC3H12BQ5HYM0 836 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 WASHC2DQ5SRD0 308 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM219BQ5XKK7 198 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 FBXW10Q5XX13 1052 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 KANK2Q63ZY3 851 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 FBXO42Q6P3S6 717 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 RNF165Q6ZSG1 346 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 KRTAP1-3Q8IUG1 177 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 HOMEZQ8IX15 550 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 PHC2Q8IXK0 858 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 KIRREL3Q8IZU9 778 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 VWA5B2Q8N398 1253 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 ZNF740Q8NDX6 193 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 WDR20Q8TBZ3 569 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 KCNA7Q96RP8 456 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 PNPOQ9NVS9 261 aa12.97□□□□□ -0.33
SHKBP1-218ENST00000598907 TRBC2A0A5B9 178 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 HAT1O14929 419 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TFECO14948 347 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 LCMT2O60294 686 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 MAN1A2O60476 641 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 TGDSO95455 350 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 ICAM2P13598 275 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 RFC3P40938 356 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 HK2P52789 917 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 MEF2AQ02078 507 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 SLBPQ14493 270 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CPSF6Q16630 551 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 BTBD16Q32M84 506 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 PAGE2BQ5JRK9 111 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 SH2D4BQ5SQS7 431 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 PRMT9Q6P2P2 845 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 ARSKQ6UWY0 536 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 FAM47EQ6ZV65 393 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CRLF3Q8IUI8 442 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 LRRC34Q8IZ02 419 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CIARTQ8N365 385 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CDYL2Q8N8U2 506 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 OR7G3Q8NG95 312 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 OR10Q1Q8NGQ4 319 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 PIWIL2Q8TC59 973 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 METTL6Q8TCB7 284 aa12.96□□□□□ -0.33
SHKBP1-218ENST00000598907 CHMP6Q96FZ7 201 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms