RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 A0A0A6YYD5 115 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 A0A1W2PP55 124 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 LRIT2A6NDA9 550 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 ZAR1LA6NP61 321 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 EFCAB9A8MZ26 197 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PDE9AO76083 593 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 CTSKP43235 329 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 CCT3P49368 545 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 RAB28P51157 221 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 NUDT6P53370 316 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 ERVK-21P61565 698 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 ITGADQ13349 1161 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 SYT16Q17RD7 645 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 FRMPD2BQ6IN97 320 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TAGAPQ8N103 731 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 FLCNQ8NFG4 579 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 TEFMQ96QE5 360 aaKnown RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 TIMM29Q9BSF4 260 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 AICDAQ9GZX7 198 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 OSGEPL1Q9H4B0 414 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 PHPT1Q9NRX4 125 aaPredicted RBP9.56□□□□□ -0.88
VPS53-220ENST00000576149 GPR83Q9NYM4 423 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 FTSJ1Q9UET6 329 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 DUSP12Q9UNI6 340 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 CDH23Q9H251 3354 aa9.56□□□□□ -0.88
VPS53-220ENST00000576149 A0A1W2PRQ8 180 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CACNB4O00305 520 aaPredicted RBP9.55□□□□□ -0.88
VPS53-220ENST00000576149 PPM1DO15297 605 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 SEMA7AO75326 666 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 APODP05090 189 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 STSP08842 583 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 OCM2P0CE71 109 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 OCMP0CE72 109 aaPredicted RBP9.55□□□□□ -0.88
VPS53-220ENST00000576149 DRD2P14416 443 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CHMP24386 653 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 KCNJ5P48544 419 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CRISP1P54107 249 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CDC42P60953 191 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TIGD6Q17RP2 521 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 RGS21Q2M5E4 152 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TCTN3Q6NUS6 607 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ADCK2Q7Z695 626 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 BTLAQ7Z6A9 289 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ADCK1Q86TW2 530 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 YAF2Q8IY57 180 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 C7orf61Q8IZ16 206 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TTLQ8NG68 377 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 OR6Q1Q8NGQ2 317 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 OR2L8Q8NGY9 312 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 KLK6Q92876 244 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 DHRS1Q96LJ7 313 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZNF354BQ96LW1 612 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 COL21A1Q96P44 957 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 DPH7Q9BTV6 452 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 SLIRPQ9GZT3 109 aaKnown RBP9.55□□□□□ -0.88
VPS53-220ENST00000576149 SERHL2Q9H4I8 314 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 XKR8Q9H6D3 395 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CERS4Q9HA82 394 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 IMP3Q9NV31 184 aaKnown RBP9.55□□□□□ -0.88
VPS53-220ENST00000576149 OSGIN1Q9UJX0 560 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 SLC6A14Q9UN76 642 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 DSPPQ9NZW4 1301 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TRPM6Q9BX84 2022 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 A0A0G2JN53 185 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TRBV4-1A0A0J9YWV2 114 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 PRAMEF27A3QJZ7 478 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 PRR19A6NJB7 356 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ANHXE9PGG2 379 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 M0R129 80 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 LATO43561 262 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 MPZL2O60487 215 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ADAP00813 363 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 SERPIND1P05546 499 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 CEACAM5P06731 702 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 PKLRP30613 574 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 SSR2P43308 183 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ST3GAL4Q11206 333 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TP53BP2Q13625 1128 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ATP1A4Q13733 1029 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 IRF3Q14653 427 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZIC1Q15915 447 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TMEM35AQ53FP2 167 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 NDUFAF5Q5TEU4 345 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 TMEM236Q5W0B7 351 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZNF793Q6ZN11 406 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 NUDT18Q6ZVK8 323 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZNF554Q86TJ5 538 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 MFSD4AQ8N468 514 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 STX19Q8N4C7 294 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZNF675Q8TD23 568 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 RASSF5Q8WWW0 418 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZHX1-C8orf76Q96EF9 292 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 AMDHD1Q96NU7 426 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 ZNF607Q96SK3 696 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 C17orf62Q9BQA9 187 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 RAB11FIP5Q9BXF6 653 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 C1QTNF2Q9BXJ5 285 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 BTBD1Q9H0C5 482 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 GLIPR2Q9H4G4 154 aa9.55□□□□□ -0.88
VPS53-220ENST00000576149 MS4A12Q9NXJ0 267 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms