RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TMEM52Q8NDY8 209 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 B3GNT7Q8NFL0 401 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 UHMK1Q8TAS1 419 aaKnown RBP6.94□□□□□ -1.3
NUP88-205ENST00000572809 THAP3Q8WTV1 239 aaPredicted RBP6.94□□□□□ -1.3
NUP88-205ENST00000572809 UBTD2Q8WUN7 234 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 ATP6V1E2Q96A05 226 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 TRIM44Q96DX7 344 aaPredicted RBP6.94□□□□□ -1.3
NUP88-205ENST00000572809 C5orf34Q96MH7 638 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 SIGLEC12Q96PQ1 595 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 KCNC2Q96PR1 638 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 PAFAH2Q99487 392 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 SLX1AQ9BQ83 275 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 MS4A8Q9BY19 250 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 ALOXE3Q9BYJ1 711 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 IPPKQ9H8X2 491 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 ACTR8Q9H981 624 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 ANKRD10Q9NXR5 420 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 KCMF1Q9P0J7 381 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 CPSF2Q9P2I0 782 aaKnown RBP6.94□□□□□ -1.3
NUP88-205ENST00000572809 ERRFI1Q9UJM3 462 aaPredicted RBP6.94□□□□□ -1.3
NUP88-205ENST00000572809 ZNF180Q9UJW8 692 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 NFU1Q9UMS0 254 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 PCDHB10Q9UN67 800 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 OSGIN2Q9Y236 505 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 TSC22D4Q9Y3Q8 395 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 PCDHGB6Q9Y5F9 930 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 HECTD1Q9ULT8 2610 aa6.94□□□□□ -1.3
NUP88-205ENST00000572809 RELNP78509 3460 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SYNDIG1LA6NDD5 238 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 LRRC14BA6NHZ5 514 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 CYSRT1A8MQ03 144 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TRIM49D1C9J1S8 452 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 H0YIV9 168 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SAP18O00422 153 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 RTCAO00442 366 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 E2F3O00716 465 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 LRRTM2O43300 516 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 UGDHO60701 494 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 MYO1DO94832 1006 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SIX3O95343 332 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 CLDN9O95484 217 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 WNT11O96014 354 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 IFNA16P05015 189 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SP1P08047 785 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SNRPAP09012 282 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 COL6A2P12110 1019 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TNNI3P19429 210 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 HIST1H1TP22492 207 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 ATP5A1P25705 553 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 PTX3P26022 381 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 TPP2P29144 1249 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 EEF1DP29692 281 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 PIK3CBP42338 1070 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 MAGEA12P43365 314 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 PIK3CGP48736 1102 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 CYB561P49447 251 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 GPR143P51810 404 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 HNRNPFP52597 415 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 MLF1P58340 268 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 STX4Q12846 297 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 DDX39BQ13838 428 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 TERF2Q15554 542 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 MAPKAPK3Q16644 382 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TECRLQ5HYJ1 363 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 KHDRBS2Q5VWX1 349 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 SLC25A25Q6KCM7 469 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 GFRALQ6UXV0 394 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 ZNF793Q6ZN11 406 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TAOK1Q7L7X3 1001 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 GOLGA7Q7Z5G4 137 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TMEM132CQ8N3T6 1108 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 RNF175Q8N4F7 328 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 PTGR2Q8N8N7 351 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 TMEM178AQ8NBL3 297 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 APCDD1LQ8NCL9 501 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 MDS2Q8NDY4 140 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 C7orf57Q8NEG2 295 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 HUS1BQ8NHY5 278 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 DCAKDQ8WVC6 231 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 NR4A3Q92570 626 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 RGMAQ96B86 450 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 REPS1Q96D71 796 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 PHF21BQ96EK2 531 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SCYL1Q96KG9 808 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 MTERF1Q99551 399 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 MAPKAP1Q9BPZ7 522 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 CCDC77Q9BR77 488 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 CENPKQ9BS16 269 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 KRTAP4-2Q9BYR5 136 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 OR51B5Q9H339 312 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 LYRM4Q9HD34 91 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 KLHL1Q9NR64 748 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 PSD3Q9NYI0 1048 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 LRFN1Q9P244 771 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 SUCOQ9UBS9 1254 aaKnown RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 PLEKHB1Q9UF11 243 aaPredicted RBP6.93□□□□□ -1.3
NUP88-205ENST00000572809 PFDN2Q9UHV9 154 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 FBXW2Q9UKT8 454 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 TMCO1Q9UM00 188 aa6.93□□□□□ -1.3
NUP88-205ENST00000572809 RNF11Q9Y3C5 154 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms