RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SORBS2O94875 1100 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 KLHL18O94889 574 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 GBAP04062 536 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 FHP07954 510 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 FBXO45P0C2W1 286 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ZNF888P0CJ79 500 aaPredicted RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 ATP6V1B2P21281 511 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 EPHA8P29322 1005 aaPredicted RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 PCGF2P35227 344 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 MSX2P35548 267 aaPredicted RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 CDKN2CP42773 168 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CRATP43155 626 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CCT3P49368 545 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 MAZP56270 477 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 SESN3P58005 492 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 OR4D2P58180 307 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RAB8AP61006 207 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 MC1RQ01726 317 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 EPS8Q12929 822 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 TAF11Q15544 211 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 PRTGQ2VWP7 1150 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS39-213ENST00000570062 SAXO2Q658L1 398 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 IRGCQ6NXR0 463 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 TLDC1Q6P9B6 456 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ANGPTL8Q6UXH0 198 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 MED25Q71SY5 747 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 EIF3MQ7L2H7 374 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 PRSS42Q7Z5A4 293 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 KRT73Q86Y46 540 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ZC3H7AQ8IWR0 971 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 ADGRG5Q8IZF4 528 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CLECL1Q8IZS7 167 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 SVOPLQ8N434 492 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 DTWD1Q8N5C7 304 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 OR4C6Q8NH72 309 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CANT1Q8WVQ1 401 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 PATE1Q8WXA2 126 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 NCSTNQ92542 709 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 PIGKQ92643 395 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ZNF285Q96NJ3 590 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RDH12Q96NR8 316 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 AMDHD1Q96NU7 426 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ZNF607Q96SK3 696 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 SPOCK3Q9BQ16 436 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CHID1Q9BWS9 393 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 GRIP2Q9C0E4 1043 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 KLHL31Q9H511 634 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RPF2Q9H7B2 306 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 EVA1AQ9H8M9 152 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 CACYBPQ9HB71 228 aaKnown RBP7.53□□□□□ -1.2
VPS39-213ENST00000570062 A4GALTQ9NPC4 353 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 PTGFRNQ9P2B2 879 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 DNAJB9Q9UBS3 223 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 RIMS3Q9UJD0 308 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 LIPT1Q9Y234 373 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 LRCH1Q9Y2L9 728 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 DTNAQ9Y4J8 743 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 PCDHGB2Q9Y5G2 931 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 MYO10Q9HD67 2058 aa7.53□□□□□ -1.2
VPS39-213ENST00000570062 ZFC3H1O60293 1989 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 A0A087WV62 115 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 IGHV1OR21-1A0A087WYE8 117 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SLC9B1P1A6NJY1 282 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GNGT2O14610 69 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CLOCKO15516 846 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 EMC8O43402 210 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SUV39H1O43463 412 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 PCDHGA12O60330 932 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 TNFRSF21O75509 655 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NSA2O95478 260 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 GPR75O95800 540 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 C9P02748 559 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 EIF2S1P05198 315 aaKnown RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZNF883P0CG24 379 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ST6GAL1P15907 406 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 PORP16435 677 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 ATP6V1C1P21283 382 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GALNSP34059 522 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SOAT1P35610 550 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 KHKP50053 298 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 NCBP2P52298 156 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS39-213ENST00000570062 LIM2P55344 173 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 RAB38P57729 211 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 VSX2P58304 361 aaPredicted RBP7.52□□□□□ -1.21
VPS39-213ENST00000570062 DSTNP60981 165 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 SELENOWP63302 87 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CDK6Q00534 326 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ACY1Q03154 408 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 DMWDQ09019 674 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CLN3Q13286 438 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ATP6AP1Q15904 470 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 HLA-BQ31612 363 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 GRAMD1BQ3KR37 738 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 DEFB134Q4QY38 66 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ZNF385BQ569K4 471 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 CRB2Q5IJ48 1285 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ATAD3BQ5T9A4 648 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 FAM219BQ5XKK7 198 aa7.52□□□□□ -1.21
VPS39-213ENST00000570062 ANKRD26P1Q6NSI1 321 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms