RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PRKAB1Q9Y478 270 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 THSD7BQ9C0I4 1608 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 UBXN8O00124 270 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 GPR31O00270 319 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PPP6CO00743 305 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 TULP3O75386 442 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CSF2RAP15509 400 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 STOMP27105 288 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 SAPCD1Q5SSQ6 148 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 TIPARPQ7Z3E1 657 aaKnown RBP10.36□□□□□ -0.75
CLK3-226ENST00000569406 SETD9Q8NE22 299 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 OR10J5Q8NHC4 309 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 OR14A16Q8NHC5 309 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 UBE2FQ969M7 185 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CCNB1IP1Q9NPC3 277 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PPP4R1LQ9P1A2 415 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 GREB1Q4ZG55 1949 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 LRIT2A6NDA9 550 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 MARCH11A6NNE9 402 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 KIAA0355O15063 1070 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SLC22A3O75751 556 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 USP17L7P0C7H9 530 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SLC2A2P11168 524 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 CKBP12277 381 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ANXA8P13928 327 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 OPCMLQ14982 345 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 FAM189A2Q15884 450 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ANXA8L1Q5VT79 327 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 TMEM135Q86UB9 458 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 DCUN1D3Q8IWE4 304 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ATPAF2Q8N5M1 289 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 LPCAT1Q8NF37 534 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 NTAN1Q96AB6 310 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 MRPS24Q96EL2 167 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 BSCL2Q96G97 398 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 SLC38A2Q96QD8 506 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 EDEM2Q9BV94 578 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 FBRSL1Q9HCM7 1045 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 GABRQQ9UN88 632 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 RUVBL1Q9Y265 456 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 GLYATL1P3A0A0U1RQE8 302 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 CACNG3O60359 315 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 CRTAPO75718 401 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 AKR7A3O95154 331 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SPI1P17947 270 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 CYP2B6P20813 491 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 LAPTM4AQ15012 233 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 KDM4DQ6B0I6 523 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ARMC6Q6NXE6 501 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SLC46A3Q7Z3Q1 461 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ZNF227Q86WZ6 799 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 PROSER1Q86XN7 944 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 MCATQ8IVS2 390 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 SPNS2Q8IVW8 549 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ZNF614Q8N883 585 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 Q8NFD4 153 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 GCDHQ92947 438 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 SLAMF9Q96A28 289 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 HOPXQ9BPY8 73 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 DUSP26Q9BV47 211 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 RERGLQ9H628 205 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SEC14L3Q9UDX4 400 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 FBXO10Q9UK96 956 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ISM1B1AKI9 464 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 UPK1AO00322 258 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 LYRM1O43325 122 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 PROM1O43490 865 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 UMPSP11172 480 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 HSD17B1P14061 328 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 CXCL3P19876 107 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 GPR143P51810 404 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 MRPS6P82932 125 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 NR6A1Q15406 480 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 KLHL22Q53GT1 634 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 NHLRC3Q5JS37 347 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 TMEM31Q5JXX7 168 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ZNF648Q5T619 568 aaPredicted RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 TAC4Q86UU9 113 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 TMEM74Q96NL1 305 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 GPR78Q96P69 363 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SERINC2Q96SA4 455 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 C7orf50Q9BRJ6 194 aaKnown RBP10.35□□□□□ -0.75
CLK3-226ENST00000569406 ATG101Q9BSB4 218 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 MENTQ9BUN1 341 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 ARHGAP39Q9C0H5 1083 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 SH3BP4Q9P0V3 963 aa10.35□□□□□ -0.75
CLK3-226ENST00000569406 A0A0J9YYE9 177 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 SMIM30A4D0T7 59 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 GTPBP1O00178 669 aaKnown RBP10.34□□□□□ -0.75
CLK3-226ENST00000569406 FOXE1O00358 373 aaPredicted RBP10.34□□□□□ -0.75
CLK3-226ENST00000569406 OR10H2O60403 315 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 SBK3P0C264 359 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 CYBAP13498 195 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 SLC6A2P23975 617 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 YWHAQP27348 245 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 GDI1P31150 447 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 CXCR3P49682 368 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 NR0B1P51843 470 aaKnown RBP10.34□□□□□ -0.75
CLK3-226ENST00000569406 GLO1Q04760 184 aa10.34□□□□□ -0.75
CLK3-226ENST00000569406 GRIN2CQ14957 1233 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms