RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 POLR2EP19388 210 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 AVPR1BP47901 424 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 RFX3P48380 749 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 GRIN2CQ14957 1233 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 SEC23BQ15437 767 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 BTBD16Q32M84 506 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 BRAT1Q6PJG6 821 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 WASH2PQ6VEQ5 465 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 WDR53Q7Z5U6 358 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 MARCH9Q86YJ5 346 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 Q8N402 240 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 OMA1Q96E52 524 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 MAGEB10Q96LZ2 347 aaPredicted RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 ZCCHC3Q9NUD5 404 aaKnown RBP13.79□□□□□ -0.2
VPS35-210ENST00000568784 PTGFRNQ9P2B2 879 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 TAC3Q9UHF0 121 aa13.79□□□□□ -0.2
VPS35-210ENST00000568784 C1orf226A1L170 272 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 GRM6O15303 877 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 LIM2P55344 173 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 ARPC4P59998 168 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 CSTF1Q05048 431 aaKnown RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 KRT33BQ14525 404 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 TJAP1Q5JTD0 557 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 TRIM63Q969Q1 353 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 TEFMQ96QE5 360 aaKnown RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 ZNF607Q96SK3 696 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 TRMT61BQ9BVS5 477 aaKnown RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 BHLHE41Q9C0J9 482 aaPredicted RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 COQ3Q9NZJ6 369 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 MEN1O00255 615 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 SYPL1Q16563 259 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 PDZD3Q86UT5 571 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 HOMEZQ8IX15 550 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 SLC38A5Q8WUX1 472 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 COL26A1Q96A83 441 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 MCCC1Q96RQ3 725 aaPredicted RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 MACROD1Q9BQ69 325 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 QRSL1Q9H0R6 528 aaKnown RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 ZNF222Q9UK12 451 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 LOC102723532A0A0G2JNH3 316 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 CD8B2A6NJW9 211 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 PDPK1O15530 556 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 C1GALT1C1LP0DN25 315 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 CD8BP10966 210 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 CXCR2P25025 360 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 XCR1P46094 333 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 RPS25P62851 125 aaKnown RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 RBBP4Q09028 425 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 C6orf120Q7Z4R8 191 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 NLGN4YQ8NFZ3 816 aaPredicted RBP13.78□□□□□ -0.2
VPS35-210ENST00000568784 OR8H1Q8NGG4 311 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 OR8J1Q8NGP2 316 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 TEX47Q8TBZ9 253 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 CHTF18Q8WVB6 975 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 C1GALT1Q9NS00 363 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 MAPRE3Q9UPY8 281 aa13.78□□□□□ -0.2
VPS35-210ENST00000568784 LEFTY2O00292 366 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 PDE9AO76083 593 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 HBQ1P09105 142 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 FURINP09958 794 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 FCHO2Q0JRZ9 810 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 CDK10Q15131 360 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 ZNF791Q3KP31 576 aaPredicted RBP13.77□□□□□ -0.2
VPS35-210ENST00000568784 YIPF7Q8N8F6 280 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 OR4K5Q8NGD3 323 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 OR52P1PQ8NH57 321 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 PCNPQ8WW12 178 aaKnown RBP13.77□□□□□ -0.2
VPS35-210ENST00000568784 SLC5A11Q8WWX8 675 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 GLYATL1Q969I3 302 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 SDHCQ99643 169 aaPredicted RBP13.77□□□□□ -0.2
VPS35-210ENST00000568784 TMEM245Q9H330 911 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 RNF121Q9H920 327 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 TXNL4BQ9NX01 149 aaKnown RBP13.77□□□□□ -0.2
VPS35-210ENST00000568784 CCL26Q9Y258 94 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 TMEM98Q9Y2Y6 226 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 GRIP1Q9Y3R0 1128 aa13.77□□□□□ -0.2
VPS35-210ENST00000568784 A0A1W2PQ72 361 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SH3D21A4FU49 640 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 H0YIV9 168 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 PRKYO43930 277 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SCG5P05408 212 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 PRKAR1AP10644 381 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 TATDN3Q17R31 274 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 CCDC58Q4VC31 144 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 MZT2BQ6NZ67 158 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SMARCD3Q6STE5 483 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SLCO4C1Q6ZQN7 724 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 JPH3Q8WXH2 748 aaPredicted RBP13.77□□□□□ -0.21
VPS35-210ENST00000568784 SNAPC3Q92966 411 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 TBC1D20Q96BZ9 403 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 EFCAB11Q9BUY7 163 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 BEX1Q9HBH7 125 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 AHSPQ9NZD4 102 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 CNIH4Q9P003 139 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 A3GALT2U3KPV4 340 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 SCN10AQ9Y5Y9 1956 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 H7BY64 318 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 CAPN5O15484 640 aaPredicted RBP13.77□□□□□ -0.21
VPS35-210ENST00000568784 HPGDSO60760 199 aa13.77□□□□□ -0.21
VPS35-210ENST00000568784 TAS2R41P59536 307 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms