RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 RBSNQ9H1K0 784 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 CCDC68Q9H2F9 335 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 ARL15Q9NXU5 204 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 SOX13Q9UN79 622 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 DOCK7Q96N67 2140 aa10.7□□□□□ -0.7
CLK3-222ENST00000568232 USF3Q68DE3 2245 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 LRIT2A6NDA9 550 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 LIASO43766 372 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 HIST1H2AGP0C0S8 130 aaPredicted RBP10.69□□□□□ -0.7
CLK3-222ENST00000568232 HIST1H2ADP20671 130 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 CERS1P27544 350 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 UGT2B10P36537 528 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 CD79BP40259 229 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 MSH2P43246 934 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 STXBP1P61764 594 aaKnown RBP10.69□□□□□ -0.7
CLK3-222ENST00000568232 SNX1Q13596 522 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 ANKRD34AQ69YU3 496 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 ZNF474Q6S9Z5 364 aaPredicted RBP10.69□□□□□ -0.7
CLK3-222ENST00000568232 NXPE4Q6UWF7 544 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 ADGRE4PQ86SQ3 457 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 TMPRSS11BQ86T26 416 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 PALM2Q8IXS6 379 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 SLC15A4Q8N697 577 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 C1orf54Q8WWF1 131 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 ATL1Q8WXF7 558 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 CCT6BQ92526 530 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 PPWD1Q96BP3 646 aaKnown RBP10.69□□□□□ -0.7
CLK3-222ENST00000568232 HIST1H2AHQ96KK5 128 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 RILPQ96NA2 401 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 GAL3ST4Q96RP7 486 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 HIST1H2AJQ99878 128 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 AIF1LQ9BQI0 150 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 H2AFJQ9BTM1 129 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 G6PC3Q9BUM1 346 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 AMBRA1Q9C0C7 1298 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 DAPP1Q9UN19 280 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 C15orf41Q9Y2V0 281 aa10.69□□□□□ -0.7
CLK3-222ENST00000568232 CR1P17927 2039 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 ABCA1O95477 2261 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 A0A1W2PNV4 684 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 H0Y3Z8 333 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 GNB5O14775 395 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 MSTNO14793 375 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 HAUS5O94927 633 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 GUCA1CO95843 209 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 TBX6O95947 436 aaPredicted RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 IGKV3-11P04433 115 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 FREM3P0C091 2139 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 CPN1P15169 458 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 SERPINB3P29508 390 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 DEKP35659 375 aaKnown RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 ACVR1BP36896 505 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 RPL21P46778 160 aaKnown RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 MASP1P48740 699 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 FBXW4P57775 412 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 SP140Q13342 867 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 NTRK2Q16620 822 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 VWA1Q6PCB0 445 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 PAQR3Q6TCH7 311 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 BTLAQ7Z6A9 289 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 OR4N5Q8IXE1 308 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 FAM83FQ8NEG4 500 aaPredicted RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 STARD4Q96DR4 205 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 ZFP3Q96NJ6 502 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 NDNQ99608 321 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 BEX2Q9BXY8 128 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 ANGPTL4Q9BY76 406 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 PLA2G12AQ9BZM1 189 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 OPN3Q9H1Y3 402 aaPredicted RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 PELI2Q9HAT8 420 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 LRTM1Q9HBL6 345 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 PAK5Q9P286 719 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 TRMT6Q9UJA5 497 aaKnown RBP10.68□□□□□ -0.7
CLK3-222ENST00000568232 CDC42EP3Q9UKI2 254 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 LAMP3Q9UQV4 416 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 IKBKGQ9Y6K9 419 aa10.68□□□□□ -0.7
CLK3-222ENST00000568232 TCRBV7S3A2A0A539 114 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 GRID2IPA4D2P6 1211 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 ANKRD33BA6NCL7 494 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 GOLGA6L19H0YKK7 550 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 EIF3FO00303 357 aaPredicted RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 KLF4O43474 513 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 SPRY1O43609 319 aaPredicted RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 TGM6O95932 706 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 MBD3O95983 291 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 TPM1P09493 284 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 SLC1A2P43004 574 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PGGT1BP53609 377 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 TERF1P54274 439 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 BASP1P80723 227 aaKnown RBP10.67□□□□□ -0.7
CLK3-222ENST00000568232 PRR20EP86478 221 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PRR20CP86479 221 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PRR20DP86480 221 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PRR20BP86481 221 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 PRR20AP86496 221 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 OCRLQ01968 901 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 GAB1Q13480 694 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 SERTAD2Q14140 314 aa10.67□□□□□ -0.7
CLK3-222ENST00000568232 EFTUD2Q15029 972 aaKnown RBP eCLIP10.67□□□□□ -0.7
CLK3-222ENST00000568232 C6orf52Q5T4I8 152 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms