RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SMC6Q96SB8 1091 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 ZNF717Q9BY31 904 aaPredicted RBP14.85□□□□□ -0.03
CLN3-229ENST00000567963 UCK2Q9BZX2 261 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 ACTR8Q9H981 624 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 SH2D2AQ9NP31 389 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 SNX15Q9NRS6 342 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 LIPGQ9Y5X9 500 aa14.85□□□□□ -0.03
CLN3-229ENST00000567963 NKX2-6A6NCS4 301 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 LRRC14BA6NHZ5 514 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 BCKDKO14874 412 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 SUSD5O60279 629 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 UGDHO60701 494 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 PRKRAO75569 313 aaKnown RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 KLHL2O95198 593 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 ALOX15P16050 662 aaPredicted RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 BUD31P41223 144 aaPredicted RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 NUP107P57740 925 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 TLE4Q04727 773 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 SLC10A1Q14973 349 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 PCBP2Q15366 365 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLN3-229ENST00000567963 CPSF6Q16630 551 aaKnown RBP eCLIP14.84□□□□□ -0.03
CLN3-229ENST00000567963 SLC22A10Q63ZE4 541 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 MRM1Q6IN84 353 aaKnown RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 SYT10Q6XYQ8 523 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 ACAD11Q709F0 780 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 TRILQ7L0X0 811 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 CCDC71Q8IV32 467 aaPredicted RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 SLC15A4Q8N697 577 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 OR5M9Q8NGP3 310 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 OR5M3Q8NGP4 307 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 REPS1Q96D71 796 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 MRRFQ96E11 262 aaKnown RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 FBXL20Q96IG2 436 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 GPR78Q96P69 363 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 IPPKQ9H8X2 491 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 MCCC2Q9HCC0 563 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 KCNJ16Q9NPI9 418 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 SEMA4BQ9NPR2 832 aaPredicted RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 TUBA8Q9NY65 449 aaPredicted RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 PSD3Q9NYI0 1048 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 ASB4Q9Y574 426 aa14.84□□□□□ -0.03
CLN3-229ENST00000567963 TEP1Q99973 2627 aaKnown RBP14.84□□□□□ -0.03
CLN3-229ENST00000567963 A0A096LPK6 155 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 ESYT3A0FGR9 886 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 WASHC1A8K0Z3 465 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 EEDO75530 441 aaKnown RBP14.83□□□□□ -0.03
CLN3-229ENST00000567963 TOXO94900 526 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 NADKO95544 446 aaPredicted RBP14.83□□□□□ -0.03
CLN3-229ENST00000567963 GPR75O95800 540 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 CELA3AP09093 270 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 ACVR2AP27037 513 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 BSGP35613 385 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 PIGAP37287 484 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 PHEXP78562 749 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 SLC7A5Q01650 507 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 CUL3Q13618 768 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 GTF2H2Q13888 395 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 GTF2H2CQ6P1K8 395 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 ZNF585AQ6P3V2 769 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 ADGRD1Q6QNK2 874 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 LYPD8Q6UX82 237 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 GOLGA7Q7Z5G4 137 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 L3MBTL4Q8NA19 623 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 WDR20Q8TBZ3 569 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 SLC22A8Q8TCC7 542 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 PAQR8Q8TEZ7 354 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 DDX31Q9H8H2 851 aaKnown RBP14.83□□□□□ -0.03
CLN3-229ENST00000567963 NPDC1Q9NQX5 325 aaPredicted RBP14.83□□□□□ -0.03
CLN3-229ENST00000567963 ZDHHC18Q9NUE0 388 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.83□□□□□ -0.03
CLN3-229ENST00000567963 ITGB1BP2Q9UKP3 347 aa14.83□□□□□ -0.03
CLN3-229ENST00000567963 TNPO3Q9Y5L0 923 aaKnown RBP14.83□□□□□ -0.03
CLN3-229ENST00000567963 POLQO75417 2590 aa14.83□□□□□ -0.04
CLN3-229ENST00000567963 A0A0A6YYD5 115 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 IQANK1A0A1B0GTG1 560 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ATP6AP2A0A1C7CYW4 349 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 A0A1W2PR48 441 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 FIGNL2A6NMB9 653 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 FAM90A27PA6NNH2 459 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 AQP7O14520 342 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 TMPRSS11DO60235 418 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ATP6AP2O75787 350 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ALDOAP04075 364 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 MSX1P28360 303 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 TYK2P29597 1187 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 NEK2P51955 445 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 HERVK_113P63132 956 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ERVK-8P63133 956 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 TBL3Q12788 808 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 SPRED3Q2MJR0 410 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 METTL2BQ6P1Q9 378 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 KLC3Q6P597 504 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 C17orf53Q8N3J3 647 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 DOK4Q8TEW6 326 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 RIT1Q92963 219 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 SPACA9Q96E40 222 aaPredicted RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 PELOQ9BRX2 385 aaKnown RBP14.82□□□□□ -0.04
CLN3-229ENST00000567963 TTYH2Q9BSA4 534 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 CNPPD1Q9BV87 410 aa14.82□□□□□ -0.04
CLN3-229ENST00000567963 ERVK-6Q9BXR3 956 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 518.5 ms