RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 GPC1P35052 558 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 GSK3BP49841 420 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 CDK9P50750 372 aaKnown RBP28.76■■■□□ 2.2
CTCF-203ENST00000566078 ID2Q02363 134 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 TRIP6Q15654 476 aaKnown RBP28.76■■■□□ 2.2
CTCF-203ENST00000566078 SPATS1Q496A3 300 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 RHBDD2Q6NTF9 364 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 IFNEQ86WN2 208 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 SAMD14Q8IZD0 417 aaPredicted RBP28.76■■■□□ 2.2
CTCF-203ENST00000566078 BMPERQ8N8U9 685 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 OR5AK3PQ8NH89 298 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 WDR60Q8WVS4 1066 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 COL26A1Q96A83 441 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 PIF1Q9H611 641 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 DENND2DQ9H6A0 471 aaPredicted RBP28.76■■■□□ 2.2
CTCF-203ENST00000566078 TPT1P8Q9HAU6 139 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 ZNF304Q9HCX3 659 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 ACSL6Q9UKU0 697 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 PCDHGA1Q9Y5H4 931 aa28.76■■■□□ 2.2
CTCF-203ENST00000566078 LOC105378220A0A1B0GUY1 285 aaPredicted RBP28.76■■■□□ 2.19
CTCF-203ENST00000566078 EVPLLA8MZ36 301 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 XCR1P46094 333 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 XKP51811 444 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 LRRC25Q8N386 305 aaPredicted RBP28.76■■■□□ 2.19
CTCF-203ENST00000566078 PNPT1Q8TCS8 783 aaKnown RBP28.76■■■□□ 2.19
CTCF-203ENST00000566078 CTRCQ99895 268 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 KCTD14Q9BQ13 255 aaPredicted RBP28.76■■■□□ 2.19
CTCF-203ENST00000566078 YIPF2Q9BWQ6 316 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 SIRT3Q9NTG7 399 aaPredicted RBP28.76■■■□□ 2.19
CTCF-203ENST00000566078 AP3M1Q9Y2T2 418 aa28.76■■■□□ 2.19
CTCF-203ENST00000566078 BLACEA4D250 179 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 FGF5P12034 268 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 UQCRC2P22695 453 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 MPIP34949 423 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 PTGER1P34995 402 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 DSG2Q14126 1118 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 IL11RAQ14626 422 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 KPNB1Q14974 876 aaKnown RBP28.75■■■□□ 2.19
CTCF-203ENST00000566078 BPHLQ86WA6 291 aaPredicted RBP28.75■■■□□ 2.19
CTCF-203ENST00000566078 DEFB124Q8NES8 71 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 OR10A6Q8NH74 314 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 TBC1D20Q96BZ9 403 aa28.75■■■□□ 2.19
CTCF-203ENST00000566078 AKAP7Q9P0M2 348 aaPredicted RBP28.75■■■□□ 2.19
CTCF-203ENST00000566078 RNF103-CHMP3A0A140T963 221 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 DNAJA2O60884 412 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 CDC123O75794 336 aaPredicted RBP28.74■■■□□ 2.19
CTCF-203ENST00000566078 CCL4P13236 92 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 PPIBP23284 216 aaKnown RBP28.74■■■□□ 2.19
CTCF-203ENST00000566078 CHI3L1P36222 383 aaPredicted RBP28.74■■■□□ 2.19
CTCF-203ENST00000566078 CLDN6P56747 220 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 ERV3-1Q14264 604 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 ARHGAP40Q5TG30 622 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 ZNF595Q8IYB9 648 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 PSMA8Q8TAA3 256 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 CLIP3Q96DZ5 547 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 STRADBQ9C0K7 418 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 KAT8Q9H7Z6 458 aaKnown RBP28.74■■■□□ 2.19
CTCF-203ENST00000566078 MAP4K5Q9Y4K4 846 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 PCDHB3Q9Y5E6 796 aa28.74■■■□□ 2.19
CTCF-203ENST00000566078 POLR1CO15160 346 aaPredicted RBP28.73■■■□□ 2.19
CTCF-203ENST00000566078 B4GALT2O60909 372 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 GPR75O95800 540 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 NTRK1P04629 796 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 FHP07954 510 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 CPMP14384 443 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 PPP2R1BP30154 601 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 MC2RQ01718 297 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 SPDYE7PQ495Y7 208 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 CDCP2Q5VXM1 449 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 ANGPTL8Q6UXH0 198 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 GPR155Q7Z3F1 870 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 GLRX5Q86SX6 157 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 OR9A2Q8NGT5 310 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 ANKRD9Q96BM1 317 aaPredicted RBP28.73■■■□□ 2.19
CTCF-203ENST00000566078 ASB9Q96DX5 294 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 PHOX2BQ99453 314 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 PCDHAC1Q9H158 963 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 USP22Q9UPT9 525 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 CORO2BQ9UQ03 480 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 CCDC88CQ9P219 2028 aa28.73■■■□□ 2.19
CTCF-203ENST00000566078 PORP16435 677 aaPredicted RBP28.72■■■□□ 2.19
CTCF-203ENST00000566078 SLC13A2Q13183 592 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 TRIM25Q14258 630 aaKnown RBP28.72■■■□□ 2.19
CTCF-203ENST00000566078 C10orf111Q8N326 155 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 FAM120BQ96EK7 910 aaKnown RBP28.72■■■□□ 2.19
CTCF-203ENST00000566078 ZNF583Q96ND8 569 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 CMKLR1Q99788 373 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 TMEM121BQ9BXQ6 578 aaPredicted RBP28.72■■■□□ 2.19
CTCF-203ENST00000566078 PRTFDC1Q9NRG1 225 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 SEMA3GQ9NS98 782 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 TRPC4Q9UBN4 977 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 MYOCOSA0A1B0GUC4 107 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 HBQ1P09105 142 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 MS4A2Q01362 244 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 LTB4RQ15722 352 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 ASCL5Q7RTU5 278 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 SLC38A9Q8NBW4 561 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 DPH2Q9BQC3 489 aaPredicted RBP28.72■■■□□ 2.19
CTCF-203ENST00000566078 GMEB1Q9Y692 573 aa28.72■■■□□ 2.19
CTCF-203ENST00000566078 ZFHX2Q9C0A1 2572 aaPredicted RBP28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms