RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PRF1P14222 555 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 ALOX15P16050 662 aaPredicted RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 AGAP20933 346 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 GALNSP34059 522 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 CCNG1P51959 295 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 CDH13P55290 713 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 FOXO1Q12778 655 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 ZNF750Q32MQ0 723 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 C10orf62Q5T681 223 aaPredicted RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 LETMD1Q6P1Q0 360 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 MTFR2Q6P444 385 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 RPTNQ6XPR3 784 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 TRMT10CQ7L0Y3 403 aaKnown RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 CEP112Q8N8E3 955 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 LRRN4CLQ8ND94 238 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 MYRIPQ8NFW9 859 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 OR2M7Q8NG81 312 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 OR5L2Q8NGL0 311 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 ASB15Q8WXK1 588 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 MTFMTQ96DP5 389 aaKnown RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 FBXL20Q96IG2 436 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 DGAT2Q96PD7 388 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 SERPINI1Q99574 410 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 CENPKQ9BS16 269 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 ZDHHC11Q9H8X9 412 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 TIMMDC1Q9NPL8 285 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 FARSBQ9NSD9 589 aaKnown RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 HPF1Q9NWY4 346 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 TEX10Q9NXF1 929 aaPredicted RBP13.76□□□□□ -0.21
CLN3-213ENST00000565047 TMEM216Q9P0N5 145 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 SH3BGRL2Q9UJC5 107 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 ADAM29Q9UKF5 820 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 IKBKGQ9Y6K9 419 aa13.76□□□□□ -0.21
CLN3-213ENST00000565047 CSMD2Q7Z408 3487 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 A0A1B0GTH9 108 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 EXOC1LA0A1B0GW35 172 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 SMIM24O75264 130 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 TLX1P31314 330 aaPredicted RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 SOX18P35713 384 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 HSD17B3P37058 310 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 BUD31P41223 144 aaPredicted RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 SLC37A1P57057 533 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 TBL3Q12788 808 aaKnown RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 HYAL4Q2M3T9 481 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 UNC50Q53HI1 259 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 SH2D5Q6ZV89 423 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 NCCRP1Q6ZVX7 275 aaPredicted RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 TAOK1Q7L7X3 1001 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 MILR1Q7Z6M3 343 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 NUDT13Q86X67 352 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 IFT20Q8IY31 132 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 METTL4Q8N3J2 472 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 ZNF441Q8N8Z8 693 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 GOLM1Q8NBJ4 401 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 DOK4Q8TEW6 326 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 AGAP11Q8TF27 550 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 SREK1Q8WXA9 508 aaKnown RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 RBM18Q96H35 190 aaKnown RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 MAGED4Q96JG8 741 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 SGCZQ96LD1 299 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 MRPL1Q9BYD6 325 aaKnown RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 PROK2Q9HC23 129 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 SEMA4BQ9NPR2 832 aaPredicted RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 SUCOQ9UBS9 1254 aaKnown RBP13.75□□□□□ -0.21
CLN3-213ENST00000565047 FETUBQ9UGM5 382 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 CES1P1Q9UKY3 287 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 CACNA1DQ01668 2161 aa13.75□□□□□ -0.21
CLN3-213ENST00000565047 E9PLN8 166 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 DLX3O60479 287 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 SLC35E2P0CK97 266 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 NR2F6P10588 404 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 COX7A2P14406 83 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 TSPAN8P19075 237 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 CNR1P21554 472 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 PHEXP78562 749 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 PLIN5Q00G26 463 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 GALNT1Q10472 559 aaPredicted RBP13.74□□□□□ -0.21
CLN3-213ENST00000565047 GTF3C1Q12789 2109 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 ASPHQ12797 758 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 SLC29A2Q14542 456 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 EBPQ15125 230 aaKnown RBP13.74□□□□□ -0.21
CLN3-213ENST00000565047 ZNF630Q2M218 657 aaPredicted RBP13.74□□□□□ -0.21
CLN3-213ENST00000565047 EMC4Q5J8M3 183 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 ZNF678Q5SXM1 525 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 XKRXQ6PP77 449 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 OPN5Q6U736 354 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 RTL4Q6ZR62 310 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 FAM57AQ8TBR7 257 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 TRPC4APQ8TEL6 797 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 PHF10Q8WUB8 498 aaKnown RBP13.74□□□□□ -0.21
CLN3-213ENST00000565047 ATP6V1E2Q96A05 226 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 MTBPQ96DY7 904 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 VKORC1Q9BQB6 163 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 ERVK-11Q9UQG0 969 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 ADGRG4Q8IZF6 3080 aa13.74□□□□□ -0.21
CLN3-213ENST00000565047 PRSS44E7EML9 344 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 TFECO14948 347 aaPredicted RBP13.73□□□□□ -0.21
CLN3-213ENST00000565047 PDYNP01213 254 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 KLK1P06870 262 aa13.73□□□□□ -0.21
CLN3-213ENST00000565047 CT62P0C5K7 136 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms