RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 LRFN1Q9P244 771 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 RAB21Q9UL25 225 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 PSME2Q9UL46 239 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 YARS2Q9Y2Z4 477 aaKnown RBP12.48□□□□□ -0.41
CLK3-216ENST00000564468 PLLPQ9Y342 182 aa12.48□□□□□ -0.41
CLK3-216ENST00000564468 A0A1W2PR48 441 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 C1orf226A1L170 272 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 SERTM1A2A2V5 107 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 ANKUB1A6NFN9 424 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 OR10H2O60403 315 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 CRCPO75575 148 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 AGFG2O95081 481 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 AIFM1O95831 613 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 GBAP04062 536 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 EDN3P14138 238 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 PIK3R1P27986 724 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 GALNSP34059 522 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 TRHRP34981 398 aaPredicted RBP12.47□□□□□ -0.41
CLK3-216ENST00000564468 HLCSP50747 726 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 ID2Q02363 134 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 NR6A1Q15406 480 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 SPIN4Q56A73 249 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 FHL5Q5TD97 284 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 FRMD7Q6ZUT3 714 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 CROCCP2Q86T23 111 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 OR4N5Q8IXE1 308 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 GPALPP1Q8IXQ4 340 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 SRRM1Q8IYB3 904 aaKnown RBP12.47□□□□□ -0.41
CLK3-216ENST00000564468 BANPQ8N9N5 519 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 MDS2Q8NDY4 140 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 SLC2A12Q8TD20 617 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 AGAP11Q8TF27 550 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 TRMOQ9BU70 441 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 FAIM2Q9BWQ8 316 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 TRIM45Q9H8W5 580 aaPredicted RBP12.47□□□□□ -0.41
CLK3-216ENST00000564468 PLEKHB1Q9UF11 243 aaPredicted RBP12.47□□□□□ -0.41
CLK3-216ENST00000564468 NTNG1Q9Y2I2 539 aa12.47□□□□□ -0.41
CLK3-216ENST00000564468 DIDO1Q9BTC0 2240 aaKnown RBP12.47□□□□□ -0.41
CLK3-216ENST00000564468 MYOCOSA0A1B0GUC4 107 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 TRIM13O60858 407 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 ITGA10O75578 1167 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 CBX6O95503 412 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 DDAH2O95865 285 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SP1P08047 785 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SLC35E2P0CK97 266 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 DEKP35659 375 aaKnown RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 GSTM5P46439 218 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SSR4P51571 173 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 ACSM2AQ08AH3 577 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 TBL3Q12788 808 aaKnown RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 IMPG1Q17R60 797 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 NDUFAF5Q5TEU4 345 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 C6orf163Q5TEZ5 329 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 ACSM2BQ68CK6 577 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SPINK14Q6IE38 97 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SLC25A25Q6KCM7 469 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 OR4K14Q8NGD5 310 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 THAP3Q8WTV1 239 aaPredicted RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 CHTF18Q8WVB6 975 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SCMH1Q96GD3 660 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 SENP5Q96HI0 755 aaPredicted RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 SIGLEC12Q96PQ1 595 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 TEX10Q9NXF1 929 aaPredicted RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 ANKRD10Q9NXR5 420 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 MCM8Q9UJA3 840 aa12.46□□□□□ -0.41
CLK3-216ENST00000564468 ZNF223Q9UK11 482 aaPredicted RBP12.46□□□□□ -0.41
CLK3-216ENST00000564468 ICE1Q9Y2F5 2266 aa12.46□□□□□ -0.42
CLK3-216ENST00000564468 ITPR2Q14571 2701 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 GOLGA6L10A6NI86 522 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 GLOD5A6NK44 160 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 MAN1A2O60476 641 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 PRKRAO75569 313 aaKnown RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 SLC25A12O75746 678 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 NEURL1O76050 574 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 UQCRFS1P47985 274 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 RNF4P78317 190 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 GALNT1Q10472 559 aaPredicted RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 MAPKAPK3Q16644 382 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 SPRED3Q2MJR0 410 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 KRT71Q3SY84 523 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 TCHHL1Q5QJ38 904 aaPredicted RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 C10orf107Q8IVU9 208 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 CYP4Z2PQ8N1L4 340 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 C1orf52Q8N6N3 182 aaKnown RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 PRR7Q8TB68 274 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 ZNF721Q8TF20 911 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 ASB15Q8WXK1 588 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 NR4A3Q92570 626 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 RIT1Q92963 219 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 PPWD1Q96BP3 646 aaKnown RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 FBXL20Q96IG2 436 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 HBEGFQ99075 208 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 ACPTQ9BZG2 426 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 KLHL1Q9NR64 748 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 MYOTQ9UBF9 498 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 KLF13Q9Y2Y9 288 aaPredicted RBP12.45□□□□□ -0.42
CLK3-216ENST00000564468 TIMM22Q9Y584 194 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 PCDHA9Q9Y5H5 950 aa12.45□□□□□ -0.42
CLK3-216ENST00000564468 MYO7BQ6PIF6 2116 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms