RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF681Q96N22 645 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 TUBB6Q9BUF5 446 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 ING2Q9H160 280 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 ADAP2Q9NPF8 381 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 NOP53Q9NZM5 478 aaKnown RBP20.36■□□□□ 0.85
SNX1-210ENST00000560260 UTS2RQ9UKP6 389 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 ATMQ13315 3056 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 ERAL1O75616 437 aaKnown RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 PRPS2P11908 318 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 PTGER1P34995 402 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 STT3AP46977 705 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 SLC26A5P58743 744 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 ACTN3Q08043 901 aaPredicted RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 LSM12Q3MHD2 195 aaKnown RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 APLFQ8IW19 511 aaPredicted RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 KRTCAP2Q8N6L1 136 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 TMEM102Q8N9M5 508 aaPredicted RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 OR4K14Q8NGD5 310 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 PTPMT1Q8WUK0 201 aaPredicted RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 MARK4Q96L34 752 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 FER1L6-AS2Q96M78 137 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 ZNF317Q96PQ6 595 aaPredicted RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 LPAR4Q99677 370 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 NPHS2Q9NP85 383 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 AIG1Q9NVV5 245 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 EHD3Q9NZN3 535 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 EIF3LQ9Y262 564 aaKnown RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 WBP11Q9Y2W2 641 aaKnown RBP20.35■□□□□ 0.85
SNX1-210ENST00000560260 CACNA1GO43497 2377 aa20.35■□□□□ 0.85
SNX1-210ENST00000560260 TGDSO95455 350 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 IFNA16P05015 189 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 CPMP14384 443 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 PIK3R1P27986 724 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 FEN1P39748 380 aaKnown RBP20.34■□□□□ 0.85
SNX1-210ENST00000560260 XKP51811 444 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 MAD2L1Q13257 205 aaPredicted RBP20.34■□□□□ 0.85
SNX1-210ENST00000560260 PDE7AQ13946 482 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 ELAVL1Q15717 326 aaKnown RBP20.34■□□□□ 0.85
SNX1-210ENST00000560260 MPEG1Q2M385 716 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 LINC00303Q3SY05 128 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 NXNQ6DKJ4 435 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 PARP9Q8IXQ6 854 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 ST13P4Q8IZP2 240 aaPredicted RBP20.34■□□□□ 0.85
SNX1-210ENST00000560260 TTC9Q92623 222 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 DGAT2Q96PD7 388 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 REEP4Q9H6H4 257 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 KCNK13Q9HB14 408 aa20.34■□□□□ 0.85
SNX1-210ENST00000560260 ANKRD28O15084 1053 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 VIMP08670 466 aaKnown RBP20.33■□□□□ 0.85
SNX1-210ENST00000560260 SLC35E2P0CK97 266 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 SOX18P35713 384 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 ASMTP46597 345 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 PLIN5Q00G26 463 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 BORAQ6PGQ7 559 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 RIMKLAQ8IXN7 391 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 ZNF321PQ8N8H1 164 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 SUN3Q8TAQ9 357 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 VPS50Q96JG6 964 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 SLAMF7Q9NQ25 335 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 MIEF1Q9NQG6 463 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 SLC35C2Q9NQQ7 365 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 DCTN4Q9UJW0 460 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 ZNF223Q9UK11 482 aaPredicted RBP20.33■□□□□ 0.85
SNX1-210ENST00000560260 KMT2BQ9UMN6 2715 aaPredicted RBP20.33■□□□□ 0.85
SNX1-210ENST00000560260 NBEAQ8NFP9 2946 aa20.33■□□□□ 0.85
SNX1-210ENST00000560260 C17orf105B2RV13 164 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 HRKO00198 91 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 SCAMP2O15127 329 aaKnown RBP20.32■□□□□ 0.84
SNX1-210ENST00000560260 TBX19O60806 448 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 DDAH2O95865 285 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 ITGB2P05107 769 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 GPR143P51810 404 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 RRADP55042 308 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 AIMP2Q13155 320 aaKnown RBP20.32■□□□□ 0.84
SNX1-210ENST00000560260 TERF2Q15554 542 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 LTB4RQ15722 352 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 CEBPEQ15744 281 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 BTBD16Q32M84 506 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 PLAG1Q6DJT9 500 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 SPATA19Q7Z5L4 167 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 KIF2BQ8N4N8 673 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 APOBEC4Q8WW27 367 aaKnown RBP20.32■□□□□ 0.84
SNX1-210ENST00000560260 ZNF764Q96H86 408 aaPredicted RBP20.32■□□□□ 0.84
SNX1-210ENST00000560260 ATP13A2Q9NQ11 1180 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 TCF7L2Q9NQB0 619 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 TAS2R7Q9NYW3 318 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 ATP6V1HQ9UI12 483 aa20.32■□□□□ 0.84
SNX1-210ENST00000560260 PPIEQ9UNP9 301 aaKnown RBP20.32■□□□□ 0.84
SNX1-210ENST00000560260 SYNDIG1LA6NDD5 238 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 GABRR3A8MPY1 467 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 OR10H2O60403 315 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 CT62P0C5K7 136 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 ITGAMP11215 1152 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 PORP16435 677 aaPredicted RBP20.31■□□□□ 0.84
SNX1-210ENST00000560260 SF3A3Q12874 501 aaKnown RBP eCLIP20.31■□□□□ 0.845e-6■■■■■ 39.5
SNX1-210ENST00000560260 RAPSNQ13702 412 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 CLEC1AQ8NC01 280 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 APCDD1LQ8NCL9 501 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 OR7A2PQ8NGA2 310 aa20.31■□□□□ 0.84
SNX1-210ENST00000560260 CEP70Q8NHQ1 597 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms