RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MLC1Q15049 377 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CEBPEQ15744 281 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 C6orf163Q5TEZ5 329 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ZNF551Q7Z340 670 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 METTL27Q8N6F8 245 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 WDR60Q8WVS4 1066 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 GATA6Q92908 595 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ZNF681Q96N22 645 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 AMDHD1Q96NU7 426 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 GLIPR2Q9H4G4 154 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ALG2Q9H553 416 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 OCIAD1Q9NX40 245 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 GMPR2Q9P2T1 348 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 STX18Q9P2W9 335 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 DHCR7Q9UBM7 475 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 NDOR1Q9UHB4 597 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ANGPTL2Q9UKU9 493 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 RARRES3Q9UL19 164 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 AP3M1Q9Y2T2 418 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 TMEM184BQ9Y519 407 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 ZNF780BQ9Y6R6 833 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 A0A1W2PS29 197 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 EVPLLA8MZ36 301 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 COQ9O75208 318 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 C1QCP02747 245 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 C8orf89P0DMQ9 161 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 RNH1P13489 461 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 FEN1P39748 380 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 GSK3BP49841 420 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 NCBP2P52298 156 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-218ENST00000560202 PDX1P52945 283 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 E2F1Q01094 437 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 MS4A2Q01362 244 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 HSPB3Q12988 150 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 GAB1Q13480 694 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 TRIM25Q14258 630 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 SYT16Q17RD7 645 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ZNF750Q32MQ0 723 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CCDC157Q569K6 752 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 STPG1Q5TH74 334 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 RBM44Q6ZP01 1051 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 IFNEQ86WN2 208 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CCDC116Q8IYX3 515 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 SAMD14Q8IZD0 417 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 CLEC4FQ8N1N0 589 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 TRIML2Q8N7C3 387 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 AGBL5Q8NDL9 886 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 TMEM52Q8NDY8 209 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 OR4K14Q8NGD5 310 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ZFP28Q8NHY6 868 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ADAMTS18Q8TE60 1221 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ZFP90Q8TF47 636 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 TANKQ92844 425 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 PEX11GQ96HA9 241 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ECSITQ9BQ95 431 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CXorf36Q9H7Y0 433 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 KAT8Q9H7Z6 458 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 TPT1P8Q9HAU6 139 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 NEUROD4Q9HD90 331 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 SUCOQ9UBS9 1254 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 CDC14AQ9UNH5 594 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 SRPK3Q9UPE1 567 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 MAU2Q9Y6X3 613 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 UNC13CQ8NB66 2214 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 EFCAB7A8K855 629 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 DSCR3O14972 297 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 HYAL3O43820 417 aaPredicted RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 DNAJA2O60884 412 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 RFPL3O75679 317 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 UQCRC2P22695 453 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 PPIBP23284 216 aaKnown RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 CCKBRP32239 447 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 MPIP34949 423 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 SOAT1P35610 550 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 OR1D4P47884 311 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 CDK9P50750 372 aaKnown RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 XKP51811 444 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 DUSP2Q05923 314 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 BPHLQ86WA6 291 aaPredicted RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 OR4N5Q8IXE1 308 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 OR51Q1Q8NH59 317 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 OR10A6Q8NH74 314 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 PSMA8Q8TAA3 256 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 SUN3Q8TAQ9 357 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 STMN2Q93045 179 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 ASB9Q96DX5 294 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 ZNF583Q96ND8 569 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 KCTD14Q9BQ13 255 aaPredicted RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 SLC35A5Q9BS91 424 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 PCDHAC1Q9H158 963 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 PIF1Q9H611 641 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 SIRT3Q9NTG7 399 aaPredicted RBP10.56□□□□□ -0.72
USP3-218ENST00000560202 SNX8Q9Y5X2 465 aa10.56□□□□□ -0.72
USP3-218ENST00000560202 RALGAPA1Q6GYQ0 2036 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 A0A1B0GX78 115 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 BLACEA4D250 179 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 ACOT8O14734 319 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 FGF17O60258 216 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 LDB3O75112 727 aa10.55□□□□□ -0.72
USP3-218ENST00000560202 GPR75O95800 540 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms