RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ST13P4Q8IZP2 240 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 TMEM251Q8N6I4 163 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 PPWD1Q96BP3 646 aaKnown RBP13.53□□□□□ -0.24
SHMT2-235ENST00000557740 FBXL20Q96IG2 436 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 GAL3ST4Q96RP7 486 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 VPS11Q9H270 941 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 IPPKQ9H8X2 491 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 WDR41Q9HAD4 459 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 HRH3Q9Y5N1 445 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 LIPGQ9Y5X9 500 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 POLQO75417 2590 aa13.53□□□□□ -0.24
SHMT2-235ENST00000557740 OTOGQ6ZRI0 2925 aa13.52□□□□□ -0.24
SHMT2-235ENST00000557740 A0A0A6YYD5 115 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 IQANK1A0A1B0GTG1 560 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ATP6AP2A0A1C7CYW4 349 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 HMX2A2RU54 273 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 OR14I1A6ND48 311 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 LRRC14BA6NHZ5 514 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 KLK8O60259 260 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF354AO60765 605 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 EEDO75530 441 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 PRKRAO75569 313 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ATP6AP2O75787 350 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 IGHG3P01860 377 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ALDOAP04075 364 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 IGKV3-11P04433 115 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 NR0B1P51843 470 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 TBL3Q12788 808 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 EMC4Q5J8M3 183 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 SLC29A4Q7RTT9 530 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 NUDT13Q86X67 352 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 RPRMLQ8N4K4 120 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 SLC15A4Q8N697 577 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 OR5M9Q8NGP3 310 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ATP6V1E2Q96A05 226 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 SPACA9Q96E40 222 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 C14orf79Q96F83 325 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ENKD1Q9H0I2 346 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ACSS3Q9H6R3 686 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 LDAHQ9H6V9 325 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 EXO5Q9H790 373 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 ZDHHC18Q9NUE0 388 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 TUBA8Q9NY65 449 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 MTRF1LQ9UGC7 380 aaKnown RBP13.52□□□□□ -0.25
SHMT2-235ENST00000557740 RNF6Q9Y252 685 aa13.52□□□□□ -0.25
SHMT2-235ENST00000557740 TEP1Q99973 2627 aaKnown RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 GLOD5A6NK44 160 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 HRKO00198 91 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 PROM1O43490 865 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 TMPRSS11DO60235 418 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 SIX3O95343 332 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 GPR75O95800 540 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 AIFM1O95831 613 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 INHBAP08476 426 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 FAM58BPP0C7Q3 252 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ACVR2AP27037 513 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 BSGP35613 385 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 PIGAP37287 484 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 MAN2A2P49641 1150 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 NUP107P57740 925 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 HERVK_113P63132 956 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ERVK-8P63133 956 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 KCNJ2P63252 427 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 TLE4Q04727 773 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 PMPCAQ10713 525 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 FOXO1Q12778 655 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 CUL3Q13618 768 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF267Q14586 743 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 SPRED3Q2MJR0 410 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF791Q3KP31 576 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 GXYLT1Q4G148 440 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 SLC22A10Q63ZE4 541 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 METTL2BQ6P1Q9 378 aaKnown RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF585AQ6P3V2 769 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 RNF111Q6ZNA4 994 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 DGAT2L6Q6ZPD8 337 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 TRILQ7L0X0 811 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 TAOK1Q7L7X3 1001 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 CCDC71Q8IV32 467 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 DND1Q8IYX4 353 aaKnown RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 PTGR2Q8N8N7 351 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 L3MBTL4Q8NA19 623 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 FAM13CQ8NE31 585 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 LRRC1Q9BTT6 524 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ERVK-6Q9BXR3 956 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF717Q9BY31 904 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 DDX31Q9H8H2 851 aaKnown RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 KCNJ16Q9NPI9 418 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 PNPLA3Q9NST1 481 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 NINJ2Q9NZG7 142 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ACAD8Q9UKU7 415 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 BOKQ9UMX3 212 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ERVK-19Q9WJR5 959 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 RNF11Q9Y3C5 154 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 IKBKGQ9Y6K9 419 aa13.51□□□□□ -0.25
SHMT2-235ENST00000557740 ZNF407Q9C0G0 2248 aa13.5□□□□□ -0.25
SHMT2-235ENST00000557740 NKX2-6A6NCS4 301 aa13.5□□□□□ -0.25
SHMT2-235ENST00000557740 OR6C76A6NM76 312 aa13.5□□□□□ -0.25
SHMT2-235ENST00000557740 FOXE1O00358 373 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-235ENST00000557740 AQP7O14520 342 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms