RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 METTL21AQ8WXB1 218 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 CIDECQ96AQ7 238 aaPredicted RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 KLHL29Q96CT2 875 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 CRELD1Q96HD1 420 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 SLAMF7Q9NQ25 335 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 MIEF1Q9NQG6 463 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 SLC35C2Q9NQQ7 365 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 SDR39U1Q9NRG7 319 aaPredicted RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 PNO1Q9NRX1 252 aaKnown RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 P4HTMQ9NXG6 502 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 TAS2R7Q9NYW3 318 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 EHD3Q9NZN3 535 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ATP6V1HQ9UI12 483 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 COPG1Q9Y678 874 aaKnown RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 DMXL2Q8TDJ6 3036 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ZFHX4Q86UP3 3567 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 IGHV1-45A0A0A0MS14 117 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 A0A1W2PQ72 361 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 HRKO00198 91 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SNX3O60493 162 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 TBX19O60806 448 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SEC24DO94855 1032 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 CPMP14384 443 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 IDO1P14902 403 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 EFNA1P20827 205 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PRPS1L1P21108 318 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 GPX3P22352 226 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PIK3R1P27986 724 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SOX18P35713 384 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 STT3AP46977 705 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 ZFP36L2P47974 494 aaKnown RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 OR4D2P58180 307 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PHC1P78364 1004 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 Q0VFX4 171 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 LTB4RQ15722 352 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 GSTA3Q16772 222 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PDCD4Q53EL6 469 aaKnown RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PAOXQ6QHF9 649 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SPATA21Q7Z572 469 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 CPLX4Q7Z7G2 160 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 RAB43Q86YS6 212 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 CCDC116Q8IYX3 515 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 OR9I1Q8NGQ6 314 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SUN3Q8TAQ9 357 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PTPMT1Q8WUK0 201 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 PPCDCQ96CD2 204 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 DPY30Q9C005 99 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF700Q9H0M5 742 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 EPN3Q9H201 632 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF385DQ9H6B1 395 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SH3BP4Q9P0V3 963 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 FBXL4Q9UKA2 621 aa11.99□□□□□ -0.49
SHMT2-227ENST00000557269 URB1O60287 2271 aaKnown RBP11.99□□□□□ -0.49
SHMT2-227ENST00000557269 SRRM3A6NNA2 597 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 MYO1GB0I1T2 1018 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 K7ENP7 123 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 IFNA16P05015 189 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CELA2AP08217 269 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 SLC35E2P0CK97 266 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 COX7A2P14406 83 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 PORP16435 677 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CSNK2A2P19784 350 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 NCF2P19878 526 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 HPCAL1P37235 193 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 DGKQP52824 942 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 WNT3P56703 355 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 MGAT2Q10469 447 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 SERTAD2Q14140 314 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 RPS6KA2Q15349 733 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CEBPEQ15744 281 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 PGS1Q32NB8 556 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CRTC2Q53ET0 693 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 BROXQ5VW32 411 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CPZQ66K79 652 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 INO80CQ6PI98 192 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 PIGWQ7Z7B1 504 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF321PQ8N8H1 164 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 SIMC1Q8NDZ2 872 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 NFAM1Q8NET5 270 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-227ENST00000557269 NACC2Q96BF6 587 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 COQ8BQ96D53 544 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 MTERF3Q96E29 417 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 IMMP1LQ96LU5 166 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 DGAT2Q96PD7 388 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CCT8L2Q96SF2 557 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 CLMPQ9H6B4 373 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF160Q9HCG1 818 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 PSME2Q9UL46 239 aa11.98□□□□□ -0.49
SHMT2-227ENST00000557269 ACACAQ13085 2346 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 ARGFXA6NJG6 315 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 C17orf105B2RV13 164 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 OR10H2O60403 315 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 SLC22A3O75751 556 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 DDAH2O95865 285 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 CT62P0C5K7 136 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 TNNI3P19429 210 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 MRPL19P49406 292 aaKnown RBP11.97□□□□□ -0.49
SHMT2-227ENST00000557269 TMPRSS3P57727 454 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 VAC14Q08AM6 782 aa11.97□□□□□ -0.49
SHMT2-227ENST00000557269 CHAF1BQ13112 559 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms