RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PKNOX1P55347 436 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 KCNK10P57789 538 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 RNF4P78317 190 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 ERCC6LQ2NKX8 1250 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 CCNYL2Q5T2Q4 361 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 OR52E8Q6IFG1 317 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 EMBQ6PCB8 327 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 PAGE2Q7Z2X7 111 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 ST13P4Q8IZP2 240 aaPredicted RBP19.04■□□□□ 0.64
VTI1B-205ENST00000555543 MMP21Q8N119 569 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 C1orf52Q8N6N3 182 aaKnown RBP19.04■□□□□ 0.64
VTI1B-205ENST00000555543 TMEM178AQ8NBL3 297 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 DNAJB8Q8NHS0 232 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 METTL6Q8TCB7 284 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 CAVIN3Q969G5 261 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 CCDC126Q96EE4 140 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 SENP5Q96HI0 755 aaPredicted RBP19.04■□□□□ 0.64
VTI1B-205ENST00000555543 FRMD6Q96NE9 622 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 ACPTQ9BZG2 426 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 WDR41Q9HAD4 459 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 MYOTQ9UBF9 498 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 STK38LQ9Y2H1 464 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 TIMM22Q9Y584 194 aa19.04■□□□□ 0.64
VTI1B-205ENST00000555543 DOPEY1Q5JWR5 2465 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 ZGRF1Q86YA3 2104 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 WWP2O00308 870 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 ESRRBO95718 433 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 ENO1P06733 434 aaKnown RBP19.03■□□□□ 0.64
VTI1B-205ENST00000555543 HMOX2P30519 316 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 SSR4P51571 173 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 MAPK12P53778 367 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 NAGLUP54802 743 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 FOXA1P55317 472 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 CSTF3Q12996 717 aaKnown RBP19.03■□□□□ 0.64
VTI1B-205ENST00000555543 MAPKAPK3Q16644 382 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 NDUFAF5Q5TEU4 345 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 FRMD7Q6ZUT3 714 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 MDGA2Q7Z553 956 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.03■□□□□ 0.64
VTI1B-205ENST00000555543 TRABD2AQ86V40 505 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 C9orf40Q8IXQ3 194 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 CYP4Z2PQ8N1L4 340 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 TMEM156Q8N614 296 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 RBM18Q96H35 190 aaKnown RBP19.03■□□□□ 0.64
VTI1B-205ENST00000555543 RASL10BQ96S79 203 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 TNFRSF12AQ9NP84 129 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 MID1IP1Q9NPA3 183 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 VPS29Q9UBQ0 182 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 COPS7AQ9UBW8 275 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 LGALS13Q9UHV8 139 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 OSGIN2Q9Y236 505 aa19.03■□□□□ 0.64
VTI1B-205ENST00000555543 YARS2Q9Y2Z4 477 aaKnown RBP19.03■□□□□ 0.64
VTI1B-205ENST00000555543 SPTBN1Q01082 2364 aaKnown RBP19.02■□□□□ 0.64
VTI1B-205ENST00000555543 OR10H2O60403 315 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 ZNF354AO60765 605 aaPredicted RBP19.02■□□□□ 0.64
VTI1B-205ENST00000555543 ULK1O75385 1050 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 OR6B1O95007 311 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 HSD3B1P14060 373 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 CPA3P15088 417 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 HSD3B2P26439 372 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 SOX3P41225 446 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 DNAJB13P59910 316 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 ERVK-8P63133 956 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 BIKQ13323 160 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 SPRED3Q2MJR0 410 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 RIBC1Q8N443 379 aaPredicted RBP19.02■□□□□ 0.64
VTI1B-205ENST00000555543 CPSF7Q8N684 471 aaKnown RBP19.02■□□□□ 0.64
VTI1B-205ENST00000555543 CCDC63Q8NA47 563 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 C7orf57Q8NEG2 295 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 OR8K3Q8NH51 312 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 RDH11Q8TC12 318 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 SSC4DQ8WTU2 575 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 FBXL20Q96IG2 436 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 PSMG3-AS1Q96PY0 264 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 TSPAN10Q9H1Z9 355 aaPredicted RBP19.02■□□□□ 0.64
VTI1B-205ENST00000555543 OXSMQ9NWU1 459 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 MKS1Q9NXB0 559 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 ERVK-19Q9WJR5 959 aa19.02■□□□□ 0.64
VTI1B-205ENST00000555543 UNC5CO95185 931 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 CLPSP04118 112 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 SLC35E2P0CK97 266 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 HMGCS1Q01581 520 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 IFFO1Q0D2I5 559 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 ZNF267Q14586 743 aaPredicted RBP19.01■□□□□ 0.63
VTI1B-205ENST00000555543 ZNF750Q32MQ0 723 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 RNFT1Q5M7Z0 435 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 SCIMPQ6UWF3 145 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 BANPQ8N9N5 519 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 CHTF18Q8WVB6 975 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 TMEM125Q96AQ2 219 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 TM4SF18Q96CE8 201 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 APOPT1Q96IL0 206 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 PELOQ9BRX2 385 aaKnown RBP19.01■□□□□ 0.63
VTI1B-205ENST00000555543 CNPPD1Q9BV87 410 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 PARD6BQ9BYG5 372 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 NMRK1Q9NWW6 199 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 CES1P1Q9UKY3 287 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 PCDHA9Q9Y5H5 950 aa19.01■□□□□ 0.63
VTI1B-205ENST00000555543 PIK3R1P27986 724 aa19■□□□□ 0.63
VTI1B-205ENST00000555543 RAE1P78406 368 aaKnown RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms