RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ASNA1O43681 348 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SH3BP5O60239 455 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PRKRAO75569 313 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MFN2O95140 757 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 KRT75O95678 551 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CSF2RAP15509 400 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CD72P21854 359 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 UQCRC2P22695 453 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ACADLP28330 430 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 GPR1P46091 355 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 DGKGP49619 791 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 MANFP55145 182 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 WDR5P61964 334 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 OLR1P78380 273 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PIN1Q13526 163 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 BCL2A1Q16548 175 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PRAMEF14Q5SWL7 426 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PRAMEF13Q5VWM6 474 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ANKRD33Q7Z3H0 272 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NRARPQ7Z6K4 114 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 LAX1Q8IWV1 398 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 OR8H2Q8N162 312 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SCAIQ8N9R8 606 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 PLA2G15Q8NCC3 412 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 IL17RDQ8NFM7 739 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 CAPSLQ8WWF8 208 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 NXPE3Q969Y0 559 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 ARRDC3Q96B67 414 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 COQ10AQ96MF6 247 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 SNTG1Q9NSN8 517 aa7.12□□□□□ -1.27
LIMA1-213ENST00000552720 TEX10Q9NXF1 929 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 YARS2Q9Y2Z4 477 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 LSM2Q9Y333 95 aaKnown RBP7.12□□□□□ -1.27
LIMA1-213ENST00000552720 KIAA0100Q14667 2235 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CXorf51AA0A1B0GTR3 108 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 A8MV72 311 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 A8MVJ9 347 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C5orf58C9J3I9 102 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 HMGN4O00479 90 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 NTN1O95631 604 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 IFNA14P01570 189 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TP53P04637 393 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 RHOP08100 348 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ALPPL2P10696 532 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C6P13671 934 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 OSMP13725 252 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TNNI3P19429 210 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TCEA1P23193 301 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SOX6P35712 828 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 MAPK12P53778 367 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TEKQ02763 1124 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF91Q05481 1191 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TARDBPQ13148 414 aaKnown RBP eCLIP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ELOAQ14241 798 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF77Q15935 545 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 BAK1Q16611 211 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 LRRC26Q2I0M4 334 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 FLYWCH1Q4VC44 716 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 DCST1Q5T197 706 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 LIPKQ5VXJ0 399 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PLPP4Q5VZY2 271 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SAXO2Q658L1 398 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CCDC149Q6ZUS6 474 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C6orf120Q7Z4R8 191 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 KIAA0907Q7Z7F0 614 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C11orf96Q7Z7L8 435 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 C11orf74Q86VG3 221 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 FAM129CQ86XR2 697 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CACUL1Q86Y37 369 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 GPR65Q8IYL9 337 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SLC7A13Q8TCU3 470 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ZNF296Q8WUU4 475 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ASB15Q8WXK1 588 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TMEM203Q969S6 136 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TM4SF18Q96CE8 201 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 NUS1Q96E22 293 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CEP19Q96LK0 163 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SLC30A2Q9BRI3 323 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PRR14Q9BWN1 585 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 UCK2Q9BZX2 261 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 KCNK12Q9HB15 430 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SMURF1Q9HCE7 757 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 LHX9Q9NQ69 397 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SIRT3Q9NTG7 399 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CNOT2Q9NZN8 540 aaKnown RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SLC23A2Q9UGH3 650 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CFL2Q9Y281 166 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CARD8Q9Y2G2 431 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SH3D21A4FU49 640 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PRRT4C9JH25 899 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 H7BY64 318 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 DYRK3O43781 588 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PRKYO43930 277 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 TMPRSS11DO60235 418 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 NME6O75414 186 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-213ENST00000552720 PAPLNO95428 1278 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 SCG5P05408 212 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 ADH1AP07327 375 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 CLEC2LP0C7M8 214 aa7.11□□□□□ -1.27
LIMA1-213ENST00000552720 LINC00271P0C7V0 271 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms