RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PDZD3Q86UT5 571 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 SLC30A8Q8IWU4 369 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 GJD3Q8N144 294 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 CHCHD4Q8N4Q1 142 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 PLA2G15Q8NCC3 412 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ZFP3Q96NJ6 502 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 NLGN3Q9NZ94 848 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 PHF11Q9UIL8 331 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 WBP11Q9Y2W2 641 aaKnown RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 TMEM150CB9EJG8 249 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 H0YJX3 145 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 J3KTA2 159 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 METAP1P53582 386 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 TPTEP56180 551 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 UGT8Q16880 541 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 LIPKQ5VXJ0 399 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ASTLQ6HA08 431 aaPredicted RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 UNC5DQ6UXZ4 953 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 CEP68Q76N32 757 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 CHERPQ8IWX8 916 aaKnown RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 OR51G2Q8NGK0 314 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ZNF675Q8TD23 568 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 VN1R3Q9BXE9 311 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 LTB4R2Q9NPC1 389 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 HCN3Q9P1Z3 774 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ANKMY1Q9P2S6 941 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 FOCADQ5VW36 1801 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 MRPL3P09001 348 aaKnown RBP14.28□□□□□ -0.12
CUX1-214ENST00000550008 TCF3P15923 654 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 GPR4P46093 362 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 TAF13Q15543 124 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 TPRG1LQ5T0D9 272 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 ANKRD34AQ69YU3 496 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 JAZF1Q86VZ6 243 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 NRROSQ86YC3 692 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 TMEFF1Q8IYR6 380 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 OR52E4Q8NGH9 312 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 UFD1Q92890 307 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 IL1RAPQ9NPH3 570 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 PRKRAO75569 313 aaKnown RBP14.28□□□□□ -0.12
CUX1-214ENST00000550008 CDRT1O95170 752 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 TSPAN12O95859 305 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 HRH2P25021 359 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 CLCN2P51788 898 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 SHC2P98077 582 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 CDK5R2Q13319 367 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 FAM214AQ32MH5 1076 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 C10orf62Q5T681 223 aaPredicted RBP14.28□□□□□ -0.12
CUX1-214ENST00000550008 IDNKQ5T6J7 187 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 MZT2BQ6NZ67 158 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 USP43Q70EL4 1123 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 NATD1Q8N6N6 113 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 OR52E1Q8NGJ3 308 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 DGAT2Q96PD7 388 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 CFIP05156 583 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 MC3RP41968 323 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 SLC3A1Q07837 685 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 IHHQ14623 411 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 WSCD2Q2TBF2 565 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 CDKL4Q5MAI5 379 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 MARCH9Q86YJ5 346 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 GALNT12Q8IXK2 581 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 NLGN4XQ8N0W4 816 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 OR4K5Q8NGD3 323 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 LGALS12Q96DT0 336 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 PEX16Q9Y5Y5 336 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 NINQ8N4C6 2090 aa14.28□□□□□ -0.12
CUX1-214ENST00000550008 FABP12A6NFH5 140 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 FXYD1O00168 92 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 TAF4O00268 1085 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 CCNKO75909 580 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 HPRP00739 348 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 CELP19835 753 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 CRISP1P54107 249 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 PFN3P60673 137 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 MVKQ03426 396 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 CLCA4Q14CN2 919 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 KLHL22Q53GT1 634 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 TBPL2Q6SJ96 375 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 DTX3Q8N9I9 347 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 OR2L2Q8NH16 312 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 PHOSPHO1Q8TCT1 267 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 APOOQ9BUR5 198 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 IKZF5Q9H5V7 419 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 PRSS16Q9NQE7 514 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 TNFRSF10DQ9UBN6 386 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 MRPS17Q9Y2R5 130 aaKnown RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 PLEKHM1Q9Y4G2 1056 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 ZNFX1Q9P2E3 1918 aaKnown RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 GREB1LQ9C091 1923 aaPredicted RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 HMGN2P05204 90 aaKnown RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 JUNDP17535 347 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 DHPSP49366 369 aaPredicted RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 SELENOWP63302 87 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 ODF4Q2M2E3 257 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 EIPR1Q53HC9 387 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 NHSL2Q5HYW2 709 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 PRPF38BQ5VTL8 546 aaKnown RBP14.27□□□□□ -0.12
CUX1-214ENST00000550008 ADIPOR2Q86V24 386 aa14.27□□□□□ -0.12
CUX1-214ENST00000550008 DRAXINQ8NBI3 349 aaPredicted RBP14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms