RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ETV3P41162 512 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 CASP9P55211 416 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM115Q12893 351 aaPredicted RBP13.05□□□□□ -0.32
VPS33A-208ENST00000543633 DUSP6Q16828 381 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 LRRC73Q5JTD7 316 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 PGBD2Q6P3X8 592 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 CEACAM20Q6UY09 585 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 CCDC149Q6ZUS6 474 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 TMC8Q8IU68 726 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 GPR32P1Q8NGA4 272 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 GRPEL2Q8TAA5 225 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 SLC7A6Q92536 515 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 AP3S1Q92572 193 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF558Q96NG5 402 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 NEDD4LQ96PU5 975 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 DEPDC7Q96QD5 511 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 IL4I1Q96RQ9 567 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 TRAF4Q9BUZ4 470 aaPredicted RBP13.05□□□□□ -0.32
VPS33A-208ENST00000543633 ZCCHC2Q9C0B9 1178 aaKnown RBP13.05□□□□□ -0.32
VPS33A-208ENST00000543633 POLR2J3Q9H1A7 115 aaKnown RBP13.05□□□□□ -0.32
VPS33A-208ENST00000543633 CXorf36Q9H7Y0 433 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 TRPV5Q9NQA5 729 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS33A-208ENST00000543633 SNTG1Q9NSN8 517 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 SNX11Q9Y5W9 270 aa13.05□□□□□ -0.32
VPS33A-208ENST00000543633 CCDC182A6NF36 153 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 MMP20O60882 483 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 TGFB1P01137 390 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 KLK1P06870 262 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 GAAP10253 952 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 DDCP20711 480 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 CXCR2P25025 360 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 PTBP1P26599 531 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS33A-208ENST00000543633 KCNJ5P48544 419 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 SLC9A3P48764 834 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 BAK1Q16611 211 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 TBRG1Q3YBR2 411 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 CYP27C1Q4G0S4 372 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 C6orf183Q5T699 404 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 DDI2Q5TDH0 399 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 TCTN3Q6NUS6 607 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 LIX1LQ8IVB5 337 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 LRRC56Q8IYG6 542 aaPredicted RBP13.04□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF689Q96CS4 500 aaPredicted RBP13.04□□□□□ -0.32
VPS33A-208ENST00000543633 SCLYQ96I15 445 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 LRIG1Q96JA1 1093 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 RIPOR3Q96MK2 946 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF607Q96SK3 696 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 SLC6A16Q9GZN6 736 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 OR51B5Q9H339 312 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 TBX21Q9UL17 535 aa13.04□□□□□ -0.32
VPS33A-208ENST00000543633 OR10H3O60404 316 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 HCN1O60741 890 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 HLA-DQB1P01920 261 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 BCHEP06276 602 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 ACADMP11310 421 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 CKMT1AP12532 417 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TIMP2P16035 220 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 FRKP42685 505 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 CNTN1Q12860 1018 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 SEC23BQ15437 767 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 KLHL22Q53GT1 634 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 SLC35F1Q5T1Q4 408 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TIGD3Q6B0B8 471 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM220Q6QAJ8 160 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 SLC9B2Q86UD5 537 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 KRT78Q8N1N4 520 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 HORMAD2Q8N7B1 307 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 PSD4Q8NDX1 1056 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 VANGL1Q8TAA9 524 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 CREB3L4Q8TEY5 395 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 SLC38A5Q8WUX1 472 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TRIM63Q969Q1 353 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 VWCEQ96DN2 955 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TRMT61AQ96FX7 289 aaKnown RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM19Q96HH6 336 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 RNF170Q96K19 258 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TXNL4BQ9NX01 149 aaKnown RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 RHCGQ9UBD6 479 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 FAM8A1Q9UBU6 413 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TESQ9UGI8 421 aaKnown RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 CLEC2DQ9UHP7 191 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 A0A1W2PRQ8 180 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TMEM129A0AVI4 362 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 HEPACAM2A8MVW5 462 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 PDPK1O15530 556 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 PI15O43692 258 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TP53P04637 393 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 HLA-DMAP28067 261 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 MMP12P39900 470 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 VASPP50552 380 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 CCL23P55773 120 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 TAP2Q03519 686 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 PRSS53Q2L4Q9 553 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 PLK5Q496M5 336 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 ZNF648Q5T619 568 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 ASTLQ6HA08 431 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 METAP1DQ6UB28 335 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-208ENST00000543633 LCTLQ6UWM7 567 aa13.03□□□□□ -0.32
VPS33A-208ENST00000543633 FAM131AQ6UXB0 335 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms