RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MBD3L2Q8NHZ7 208 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 GABPB2Q8TAK5 448 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF480Q8WV37 535 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 RNF141Q8WVD5 230 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CTNNBL1Q8WYA6 563 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 AKAP1Q92667 903 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TM4SF19Q96DZ7 209 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 WDYHV1Q96HA8 205 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 HS6ST2Q96MM7 605 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 QKIQ96PU8 341 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 PANX3Q96QZ0 392 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TNFRSF13CQ96RJ3 184 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 KRT12Q99456 494 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 FAM118BQ9BPY3 351 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 HEMGNQ9BXL5 484 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 OR8D2Q9GZM6 311 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 OPN3Q9H1Y3 402 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 PIGMQ9H3S5 423 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF703Q9H7S9 590 aaPredicted RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CALHM2Q9HA72 323 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 ACKR4Q9NPB9 350 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TMEM184CQ9NVA4 438 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 SLC2A6Q9UGQ3 507 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 LIMA1Q9UHB6 759 aaKnown RBP4.35□□□□□ -1.71
LIMS1-214ENST00000542845 LIPT1Q9Y234 373 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TRAF6Q9Y4K3 522 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 SLC22A7Q9Y694 548 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 CLCA3PQ9Y6N3 262 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 TGP01266 2768 aa4.35□□□□□ -1.71
LIMS1-214ENST00000542845 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 IGHV4-30-2A0A087WSY4 118 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 KCNE1BA0A087WTH5 132 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 A0A0G2JN53 185 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 MEGF11A6BM72 1044 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SERINC4A6NH21 518 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 HACD1B0YJ81 288 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF487B1APH4 448 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 H0Y3Z8 333 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 C16orf97H3BN30 126 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 HS3ST1O14792 307 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 CLOCKO15516 846 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 NRDCO43847 1150 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 DLX3O60479 287 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 NDUFS3O75489 264 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 RCBTB2O95199 551 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SLC16A8O95907 504 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 CBX7O95931 251 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 CATP04040 527 aaKnown RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 H2AFZP0C0S5 128 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 PAX1P15863 534 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ALOX12P18054 663 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 CHRM3P20309 590 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 HNF1AP20823 631 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 PTNP21246 168 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SAT1P21673 171 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 LOXP28300 417 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 THBS2P35442 1172 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 MTTPP55157 894 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 GFRA1P56159 465 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SKP1P63208 163 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ACTG1P63261 375 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SIRPAP78324 504 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 PRAMEP78395 509 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 GUCY1A3Q02108 690 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 RELAQ04206 551 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 MAP4K2Q12851 820 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SQLEQ14534 574 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 KCNJ11Q14654 390 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ETFDHQ16134 617 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 EXOC3L2Q2M3D2 409 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 KLHL38Q2WGJ6 581 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 EIPR1Q53HC9 387 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 FAM120AOSQ5T036 256 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ABHD17CQ6PCB6 329 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 AFTPHQ6ULP2 937 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 C22orf34Q6ZV56 151 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 H2AFVQ71UI9 128 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 P4HA3Q7Z4N8 544 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 YRDCQ86U90 279 aaKnown RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 MEX3DQ86XN8 651 aaKnown RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 PPIL6Q8IXY8 311 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 LRRC25Q8N386 305 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 TMEM132CQ8N3T6 1108 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SVOPQ8N4V2 548 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ZNF611Q8N823 705 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 C2CD4AQ8NCU7 369 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 OR5L2Q8NGL0 311 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 HTRA1Q92743 480 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ABTB1Q969K4 478 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 ZMYND19Q96E35 227 aaPredicted RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 PGM2Q96G03 612 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 RCC1LQ96I51 464 aaKnown RBP4.34□□□□□ -1.71
LIMS1-214ENST00000542845 SGCZQ96LD1 299 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 C19orf43Q9BQ61 176 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 TUBA1CQ9BQE3 449 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 DOHHQ9BU89 302 aa4.34□□□□□ -1.71
LIMS1-214ENST00000542845 NTMT1Q9BV86 223 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms