RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 PKNOX2Q96KN3 472 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 UTP23Q9BRU9 249 aaKnown RBP8.6□□□□□ -1.03
SNHG1-215ENST00000540904 EBPLQ9BY08 206 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 RNF32Q9H0A6 362 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 KCNK9Q9NPC2 374 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 RRAGDQ9NQL2 400 aaPredicted RBP8.6□□□□□ -1.03
SNHG1-215ENST00000540904 ZNF223Q9UK11 482 aaPredicted RBP8.6□□□□□ -1.03
SNHG1-215ENST00000540904 PPIEQ9UNP9 301 aaKnown RBP8.6□□□□□ -1.03
SNHG1-215ENST00000540904 PTGDR2Q9Y5Y4 395 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 COPG1Q9Y678 874 aaKnown RBP8.6□□□□□ -1.03
SNHG1-215ENST00000540904 CFAP46Q8IYW2 2715 aa8.6□□□□□ -1.03
SNHG1-215ENST00000540904 A0A1W2PS29 197 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 C1orf226A1L170 272 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 SERTM1A2A2V5 107 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 WDR91A4D1P6 747 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 GOLGA6L10A6NI86 522 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 FCHO1O14526 889 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 AZIN1O14977 448 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TM9SF1O15321 606 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 PRKNO60260 465 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ZFAND5O76080 213 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 WISP1O95388 367 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 CHEK2O96017 543 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 PIK3R1P27986 724 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ETV4P43268 484 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 SERPINB4P48594 390 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 MLF1P58340 268 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TRA2BP62995 288 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 RAE1P78406 368 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TUBA3CQ13748 450 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ZNF267Q14586 743 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 OR1C1Q15619 314 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ZNF750Q32MQ0 723 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TNFAIP8L3Q5GJ75 292 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 SPINK14Q6IE38 97 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TUBA3EQ6PEY2 450 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 HSDL2Q6YN16 418 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 C16orf47Q6ZP98 133 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 DGAT2L6Q6ZPD8 337 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TRIM46Q7Z4K8 759 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ST13P4Q8IZP2 240 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 LGI4Q8N135 537 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 OR4K14Q8NGD5 310 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 RIT1Q92963 219 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 MIB2Q96AX9 1013 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 SIGLEC12Q96PQ1 595 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 PELOQ9BRX2 385 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 CNPPD1Q9BV87 410 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 FAIM2Q9BWQ8 316 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 STMN4Q9H169 189 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 LIN28AQ9H9Z2 209 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 EML4Q9HC35 981 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 SSU72Q9NP77 194 aaKnown RBP8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ASF1BQ9NVP2 202 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 COPS7AQ9UBW8 275 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 MCM8Q9UJA3 840 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 DLGAP4Q9Y2H0 992 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TRAF6Q9Y4K3 522 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 PCDHA9Q9Y5H5 950 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 ACTL7BQ9Y614 415 aa8.59□□□□□ -1.03
SNHG1-215ENST00000540904 TMEM233B4DJY2 109 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 HRKO00198 91 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 WWP2O00308 870 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 SLC28A1O00337 649 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 PRAMEF2O60811 474 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 VPS4BO75351 444 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 SEC22BO75396 215 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ITGA10O75578 1167 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ERAL1O75616 437 aaKnown RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 OR2J2O76002 312 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 RSL1D1O76021 490 aaKnown RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ZWINTO95229 277 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 IL3P08700 152 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ANXA4P09525 319 aaPredicted RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 NUDT7P0C024 238 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 LINC00032P0C843 101 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 SLC35E2P0CK97 266 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 NEFHP12036 1026 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 PORP16435 677 aaPredicted RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 TIA1P31483 386 aaKnown RBP eCLIP8.58□□□□□ -1.048e-6■□□□□ 8.4
SNHG1-215ENST00000540904 SERPINB5P36952 375 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 FEN1P39748 380 aaKnown RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 XKP51811 444 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ERVK-8P63133 956 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 KCNC4Q03721 635 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 MPP2Q14168 576 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 CASP8Q14790 479 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 CHI3L2Q15782 390 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ZNF766Q5HY98 468 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 SH2D4BQ5SQS7 431 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ZNF468Q5VIY5 522 aaPredicted RBP8.58□□□□□ -1.04
SNHG1-215ENST00000540904 KANK2Q63ZY3 851 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 FAM180BQ6P0A1 224 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 SLC48A1Q6P1K1 146 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 GALNT18Q6P9A2 607 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ATCAYQ86WG3 371 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 DDIASQ8IXT1 998 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ARMC10Q8N2F6 343 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 HORMAD2Q8N7B1 307 aa8.58□□□□□ -1.04
SNHG1-215ENST00000540904 ANKRD42Q8N9B4 389 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms