RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 HERV-K104P61576 105 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 HTR4Q13639 388 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CLINT1Q14677 625 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CAPN13Q6MZZ7 669 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 ARL6IP6Q8N6S5 226 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 C4orf32Q8N8J7 132 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ZNF439Q8NDP4 499 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 OR4K2Q8NGD2 314 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 DPF1Q92782 380 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 MOCOSQ96EN8 888 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SEMA4CQ9C0C4 833 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 IL20Q9NYY1 176 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 FBXL4Q9UKA2 621 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 NUMBLQ9Y6R0 609 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TMEM235A6NFC5 223 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 EEDO75530 441 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 ERCC1P07992 297 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 GGT1P19440 569 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 OR1E2P47887 323 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 EMX2Q04743 252 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 EXOSC2Q13868 293 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 UPP1Q16831 310 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 EIPR1Q53HC9 387 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ARHGAP40Q5TG30 622 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 STRADAQ7RTN6 431 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TMPRSS12Q86WS5 348 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 FBXW5Q969U6 566 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SLAMF9Q96A28 289 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ADIPOR1Q96A54 375 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 FOXRED1Q96CU9 486 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 PDGFDQ9GZP0 370 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 KCNMB3Q9NPA1 279 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SIX2Q9NPC8 291 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 COQ4Q9Y3A0 265 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CCDC163A0A0D9SF12 145 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 NME4O00746 187 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 AKR7A2O43488 359 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ETFAP13804 333 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 NQO2P16083 231 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 FRKP42685 505 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 GRK6P43250 576 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 OR1G1P47890 313 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SOX2P48431 317 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 GLUD2P49448 558 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CXCR4P61073 352 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 RBM39Q14498 530 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 DUSP7Q16829 419 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 MED27Q6P2C8 311 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 METAP1DQ6UB28 335 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 RPS27LQ71UM5 84 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 SIDT2Q8NBJ9 832 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 MITD1Q8WV92 249 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TMEM41AQ96HV5 264 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SLC38A3Q99624 504 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ABCC13Q9NSE7 274 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 KIF25Q9UIL4 384 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LOC102724200A0A096LPH7 203 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 TUBAL3A6NHL2 446 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 GOT2P00505 430 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 ACVR1BP36896 505 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LIMK1P53667 647 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ODF4Q2M2E3 257 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TMUB2Q71RG4 321 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 KANSL1Q7Z3B3 1105 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ADIPOR2Q86V24 386 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 UNC93AQ86WB7 457 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LAX1Q8IWV1 398 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ZNF679Q8IYX0 411 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 ZNF619Q8N2I2 560 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 DBF4BQ8NFT6 615 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 OR6J1Q8NGC5 347 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 GNPDA2Q8TDQ7 276 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 NELFAQ9H3P2 528 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TMPRSS5Q9H3S3 457 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 IL17RBQ9NRM6 502 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 F7P08709 466 aaPredicted RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 GGT5P36269 586 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CDK3Q00526 305 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 NFKB2Q00653 900 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TCEA2Q15560 299 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 SF1Q15637 639 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 ZNF691Q5VV52 312 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 KIAA1211LQ6NV74 962 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CERS6Q6ZMG9 384 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 PLEKHH3Q7Z736 793 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 B3GNT8Q7Z7M8 397 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LIX1LQ8IVB5 337 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 MCEMP1Q8IX19 187 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 PLD6Q8N2A8 252 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 NXPE1Q8N323 547 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 PROKR2Q8NFJ6 384 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 OR4F6Q8NGB9 312 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 CHTF18Q8WVB6 975 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LINC01599Q8WXQ3 324 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TTTY10Q9BZA0 68 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 TUBB1Q9H4B7 451 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 FBXO44Q9H4M3 255 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 AAASQ9NRG9 546 aa8.41□□□□□ -1.06
YBX3-208ENST00000540447 LSM5Q9Y4Y9 91 aaKnown RBP8.41□□□□□ -1.06
YBX3-208ENST00000540447 TCRBV3S1A0A5B6 114 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms