RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TMEM129A0AVI4 362 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 LRRC14BA6NHZ5 514 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 HAS3O00219 553 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 DFFAO00273 331 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CLIC1O00299 241 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 BTN3A1O00481 513 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 RFXANKO14593 260 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 TMEM127O75204 238 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ULK1O75385 1050 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 B3GALNT1O75752 331 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SC5DO75845 299 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SOX30O94993 753 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CDRT1O95170 752 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 C22orf31O95567 290 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ECDO95905 644 aaPredicted RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 ADAP00813 363 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 VIPP01282 170 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 IFNA4P05014 189 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 HSMCR30P0CW71 290 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 IFI30P13284 250 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 KCNE1P15382 129 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SYN1P17600 705 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MAPK3P27361 379 aaPredicted RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 EPHA2P29317 976 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SLC6A4P31645 630 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PBX3P40426 434 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 RFX3P48380 749 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 LHX1P48742 406 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MAN2A2P49641 1150 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CLCN7P51798 805 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CRISP1P54107 249 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 BACE1P56817 501 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 DCDC1P59894 354 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SNRPD2P62316 118 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 RPL38P63173 70 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 KCNJ10P78508 379 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ALDH6A1Q02252 535 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 UBE3AQ05086 875 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PUDPQ08623 228 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ACSM1Q08AH1 577 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ILKQ13418 452 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 TNFAIP1Q13829 316 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 EXOSC2Q13868 293 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 BOP1Q14137 746 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 NKPD1Q17RQ9 610 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 TMEM44Q2T9K0 475 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 IFI44LQ53G44 452 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 XKR4Q5GH76 650 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 NHLRC3Q5JS37 347 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SIRPB2Q5JXA9 342 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MPP7Q5T2T1 576 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MARC1Q5VT66 337 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 FCRLBQ6BAA4 426 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 OVOS1Q6IE37 1185 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 KIAA1211LQ6NV74 962 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MSANTD2Q6P1R3 559 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PAMR1Q6UXH9 720 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CLEC20AQ6ZU45 233 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PTCHD4Q6ZW05 846 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PGAP1Q75T13 922 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 GOLGA7Q7Z5G4 137 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PIM3Q86V86 326 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PHC2Q8IXK0 858 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MRPL41Q8IXM3 137 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 TIGD4Q8IY51 512 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 NLGN1Q8N2Q7 840 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 PGBD5Q8N414 524 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 LIX1Q8N485 282 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 TMEM145Q8NBT3 493 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 OR8J2Q8NGG1 315 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 OR8J1Q8NGP2 316 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 WDR48Q8TAF3 677 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 GATAD2BQ8WXI9 593 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ELMO1Q92556 727 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 YIPF5Q969M3 257 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 ATG4CQ96DT6 458 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MTERF3Q96E29 417 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 OTUB1Q96FW1 271 aaPredicted RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 FCRL1Q96LA6 429 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 KCNC2Q96PR1 638 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 OR5M11Q96RB7 305 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 GMLQ99445 158 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 GPR20Q99678 358 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 BARD1Q99728 777 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 RTP3Q9BQQ7 232 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 TMEM175Q9BSA9 504 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 KRTAP9-9Q9BYP9 154 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 KRTAP9-4Q9BYQ2 154 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 REG4Q9BYZ8 158 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SLC39A8Q9C0K1 460 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 POLR2J2Q9GZM3 115 aaKnown RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 ABCG4Q9H172 646 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 DPAGT1Q9H3H5 408 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 CCSER2Q9H7U1 834 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 RDH14Q9HBH5 336 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 UCKL1Q9NWZ5 548 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 SIRT5Q9NXA8 310 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 MARCH4Q9P2E8 410 aaPredicted RBP6.38□□□□□ -1.39
USP28-207ENST00000538475 KLHL42Q9P2K6 505 aa6.38□□□□□ -1.39
USP28-207ENST00000538475 BTNL2Q9UIR0 455 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms