RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 ZFP28Q8NHY6 868 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 CT55Q8WUE5 264 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 DAZLQ92904 295 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 CLEC4AQ9UMR7 237 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ARL2BPQ9Y2Y0 163 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 HELZ2Q9BYK8 2649 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 TSPAN11A1L157 253 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 MYO1CO00159 1063 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SMNDC1O75940 238 aaKnown RBP eCLIP6.82□□□□□ -1.32
MSH6-209ENST00000538136 IL6P05231 212 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 BCHEP06276 602 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ACADLP28330 430 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 CORO7P57737 925 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SP140Q13342 867 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 TRMT12Q53H54 448 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 FRMD7Q6ZUT3 714 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 GALNTL5Q7Z4T8 443 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 RNF130Q86XS8 419 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 CKAP2Q8WWK9 683 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ZUFSPQ96AP4 578 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 C16orf58Q96GQ5 468 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SENP5Q96HI0 755 aaPredicted RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 ZC3H10Q96K80 434 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 PCED1AQ9H1Q7 454 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 DMRT3Q9NQL9 472 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ATP6V1HQ9UI12 483 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 EMCNQ9ULC0 261 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 PPIL1Q9Y3C6 166 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SETXQ7Z333 2677 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 G3V2L1 256 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 TMPRSS11DO60235 418 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 UBOX5O94941 541 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 AIFM1O95831 613 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ALOX5P09917 674 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 TNFRSF1BP20333 461 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ATP6V1B2P21281 511 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 RXRGP48443 463 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 RASSF2P50749 326 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 POLR2JP52435 117 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 SNTB1Q13884 538 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 LAPTM4AQ15012 233 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SHBQ15464 509 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 RABL3Q5HYI8 236 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SPDYCQ5MJ68 293 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 RAB43Q86YS6 212 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 C10orf67Q8IYJ2 551 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 UBE2J2Q8N2K1 259 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 GALNT4Q8N4A0 578 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ZNF248Q8NDW4 579 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 ZBED6CLQ96FA7 236 aaPredicted RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 NOP53Q9NZM5 478 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 RHCGQ9UBD6 479 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 SEC14L3Q9UDX4 400 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 PCDHGA4Q9Y5G9 962 aa6.82□□□□□ -1.32
MSH6-209ENST00000538136 TEP1Q99973 2627 aaKnown RBP6.82□□□□□ -1.32
MSH6-209ENST00000538136 TRBV5-4A0A0C4DH59 114 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 H3BSH0 61 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 E2F3O00716 465 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 UBFD1O14562 309 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 TFECO14948 347 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 SRPX2O60687 465 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 PGM3O95394 542 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TSPAN12O95859 305 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ABOP16442 354 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 PIGAP37287 484 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 MAGEA6P43360 314 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 MCCD1P59942 119 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 PMP22Q01453 160 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ZNF763Q0D2J5 394 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 DESI1Q6ICB0 168 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 LARP4Q71RC2 724 aaKnown RBP eCLIP6.81□□□□□ -1.322e-6■■□□□ 13.2
MSH6-209ENST00000538136 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 P4HA3Q7Z4N8 544 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 GBP7Q8N8V2 638 aaPredicted RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 UBXN10Q96LJ8 280 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR1F2PQ96R84 312 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SLC35A5Q9BS91 424 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SMOXQ9NWM0 555 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SPATA7Q9P0W8 599 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 ANKHD1Q8IWZ3 2542 aaKnown RBP6.81□□□□□ -1.32
MSH6-209ENST00000538136 ZZEF1O43149 2961 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 C2orf92A0A1B0GVN3 265 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 TMX2-CTNND1H3BSU7 103 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR7A17O14581 309 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 FGF17O60258 216 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 KCNJ13O60928 360 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 DCTN3O75935 186 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 IGHV3-9P01782 118 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR1E2P47887 323 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 FASLGP48023 281 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 KRT72Q14CN4 511 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 SPINK14Q6IE38 97 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 CYB5D1Q6P9G0 228 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 CYP4Z2PQ8N1L4 340 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 CNEP1R1Q8N9A8 125 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR52R1Q8NGF1 315 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 OR14L1PQ8NHC6 308 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 RNF145Q96MT1 663 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 EFCAB1Q9HAE3 211 aa6.81□□□□□ -1.32
MSH6-209ENST00000538136 EPHA6Q9UF33 1036 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms