RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 B4GALNT1Q00973 533 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 HMGCS1Q01581 520 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 GRIK2Q13002 908 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 PTGR1Q14914 329 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 FCN2Q15485 313 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 GPR33Q49SQ1 333 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 MZT2BQ6NZ67 158 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 GDPD4Q6W3E5 623 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 VTCN1Q7Z7D3 282 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 USP7Q93009 1102 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 GPR137Q96N19 417 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 ZNF382Q96SR6 550 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 AUP1Q9Y679 476 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 CARNS1A5YM72 827 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 GRXCR1A8MXD5 290 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 INMT-MINDY4F8WBC2 141 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 CDRT1O95170 752 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 CYP17A1P05093 508 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 RRASP10301 218 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 CHMP24386 653 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 NSG1P42857 185 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 KCNC3Q14003 757 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 TMEM240Q5SV17 173 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 LRFN4Q6PJG9 635 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ADGRG3Q86Y34 549 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 AP2M1Q96CW1 435 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 C1QTNF3Q9BXJ4 246 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ARL15Q9NXU5 204 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ZDHHC3Q9NYG2 299 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 OBSL1O75147 1896 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 TRBV5-4A0A0C4DH59 114 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 OR2AG2A6NM03 316 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 PRKAR1AP10644 381 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 SLC2A4P14672 509 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 FPR1P21462 350 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 XPAP23025 273 aaPredicted RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 CSNK2BP67870 215 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 AP5B1Q2VPB7 878 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 FAM209BQ5JX69 171 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ZNF600Q6ZNG1 722 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 TRILQ7L0X0 811 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 EIF3MQ7L2H7 374 aaKnown RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 GPR149Q86SP6 731 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 C10orf111Q8N326 155 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 LRRC17Q8N6Y2 441 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 CDC26Q8NHZ8 85 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ULK4Q96C45 1275 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 REEP1Q9H902 201 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 IMPAD1Q9NX62 359 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 MS4A12Q9NXJ0 267 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 MAPRE3Q9UPY8 281 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 MRPS23Q9Y3D9 190 aaKnown RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 PRAMEF33A0A0G2JMD5 474 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 RPS10-NUDT3A0A1W2PQS6 291 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 PRAMEF10O60809 474 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 TRIM3O75382 744 aaPredicted RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 HRGP04196 525 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 CEBPBP17676 345 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 VIPR2P41587 438 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 HAAOP46952 286 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 SPINT3P49223 89 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 HNRNPA0Q13151 305 aaKnown RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 PPIGQ13427 754 aaKnown RBP eCLIP13.32□□□□□ -0.283e-7■■■□□ 16.7
LIG1-203ENST00000536218 CPSF6Q16630 551 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIG1-203ENST00000536218 RFTN2Q52LD8 501 aaPredicted RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 TCEAL5Q5H9L2 206 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 GPR139Q6DWJ6 353 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 RASSF6Q6ZTQ3 369 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ADGRD2Q7Z7M1 963 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 GPALPP1Q8IXQ4 340 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 GPR65Q8IYL9 337 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ECHDC3Q96DC8 303 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 LRRC3BQ96PB8 259 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 ZBTB18Q99592 522 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 NUSAP1Q9BXS6 441 aaKnown RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 MED28Q9H204 178 aa13.32□□□□□ -0.28
LIG1-203ENST00000536218 THUMPD1Q9NXG2 353 aaKnown RBP13.32□□□□□ -0.28
LIG1-203ENST00000536218 CHD9Q3L8U1 2897 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 CKMT1AP12532 417 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 F8A1P23610 371 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 NNMTP40261 264 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 RPIAP49247 311 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 CLCNKAP51800 687 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 PCBP2Q15366 365 aaKnown RBP eCLIP13.31□□□□□ -0.288e-7■■■■■ 26.8
LIG1-203ENST00000536218 SSX1Q16384 188 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 TTLL9Q3SXZ7 439 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 ZNF57Q68EA5 555 aaPredicted RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 MACC1Q6ZN28 852 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 HSD11B1LQ7Z5J1 315 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 VRK3Q8IV63 474 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 ZBED6CLQ96FA7 236 aaPredicted RBP13.31□□□□□ -0.28
LIG1-203ENST00000536218 ZDHHC4Q9NPG8 344 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 SLC25A37Q9NYZ2 338 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 OARD1Q9Y530 152 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 PIPSLA2A3N6 862 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 LOC730098B7Z3J9 87 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 PTP4A3O75365 173 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 OTCP00480 354 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 TPOP07202 933 aa13.31□□□□□ -0.28
LIG1-203ENST00000536218 ACSM4P0C7M7 580 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms