RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SPRP35270 261 aaPredicted RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 RPL34P49207 117 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 CCR4P51679 360 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 LIMK2P53671 638 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ZFP36L1Q07352 338 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 HSPA14Q0VDF9 509 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 MLF2Q15773 248 aaPredicted RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 CT45A2Q5DJT8 189 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 AGAP7PQ5VUJ5 663 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 PLPP4Q5VZY2 271 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 LIPJQ5W064 366 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 OLFML2AQ68BL7 652 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 SEL1L3Q68CR1 1132 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 Q6ZRG5 221 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 C5orf24Q7Z6I8 188 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 STHQ8IWL8 128 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ZC3H3Q8IXZ2 948 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 GPD1LQ8N335 351 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 SAMD12Q8N8I0 201 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 RTL3Q8N8U3 475 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 GPATCH11Q8N954 259 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 SIDT2Q8NBJ9 832 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 CLEC1AQ8NC01 280 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ANKRD20A12PQ8NF67 263 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 C8orf46Q8TAG6 207 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 FBXO25Q8TCJ0 367 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ZPLD1Q8TCW7 415 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 UBTD2Q8WUN7 234 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 LIPHQ8WWY8 451 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 HIST1H2ACQ93077 130 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 GLYATL1Q969I3 302 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 C16orf58Q96GQ5 468 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 NSMCE2Q96MF7 247 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ALKBH3Q96Q83 286 aaPredicted RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 PRAM1Q96QH2 718 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 ERGIC2Q96RQ1 377 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 AGPAT1Q99943 283 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 LRRCC1Q9C099 1032 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 WWP1Q9H0M0 922 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 TMEM245Q9H330 911 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 WDR41Q9HAD4 459 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 MRPL17Q9NRX2 175 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 DNAJC11Q9NVH1 559 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.24□□□□□ -2.05
CD44-238ENST00000534296 NDUFA13Q9P0J0 144 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 IL19Q9UHD0 177 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 PILRAQ9UKJ1 303 aa2.24□□□□□ -2.05
CD44-238ENST00000534296 MRPS2Q9Y399 296 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 STRAPQ9Y3F4 350 aaKnown RBP2.24□□□□□ -2.05
CD44-238ENST00000534296 RNF103-CHMP3A0A140T963 221 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 BCLAF3A2AJT9 711 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 OR5H15A6NDH6 313 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 IGLON5A6NGN9 336 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MEI4A8MW99 385 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 LMO7DNF2Z398 122 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 RNF103O00237 685 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 FBP2O00757 339 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MLNRO43193 412 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ZNF749O43361 778 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 SNAP91O60641 907 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 GALR3O60755 368 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 CSO75390 466 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 NME6O75414 186 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 ANGPTL1O95841 491 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MT-ND3P03897 115 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 APRTP07741 180 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ABHD2P08910 425 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MMP10P09238 476 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ARF4P18085 180 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 AZU1P20160 251 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 GJB2P29033 226 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ID1P41134 155 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 FHITP49789 147 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 TNFSF10P50591 281 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 HNRNPFP52597 415 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 SLC12A3P55017 1021 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 UCP2P55851 309 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 BACE1P56817 501 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 NOP14P78316 857 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 BNIP1Q12981 228 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 EMC2Q15006 297 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 ZNF146Q15072 292 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 SHROOM1Q2M3G4 852 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 GPAT3Q53EU6 434 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 CAPN13Q6MZZ7 669 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 KCNMB4Q86W47 210 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 HPS6Q86YV9 775 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 GVQW1Q8N7I0 195 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 MLKLQ8NB16 471 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 CCNYQ8ND76 341 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 EXOC6Q8TAG9 804 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 BCL2L2Q92843 193 aaPredicted RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 MRPL24Q96A35 216 aaKnown RBP2.23□□□□□ -2.05
CD44-238ENST00000534296 PCED1BQ96HM7 432 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 FAM218AQ96MZ4 157 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 RUNDC3BQ96NL0 473 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 SSX3Q99909 188 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 OCR1Q9BZK8 76 aa2.23□□□□□ -2.05
CD44-238ENST00000534296 SLC26A1Q9H2B4 701 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms