RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 OR52E8Q6IFG1 317 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 TUBA3EQ6PEY2 450 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 ZNF227Q86WZ6 799 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 ST13P4Q8IZP2 240 aaPredicted RBP12.08□□□□□ -0.48
VPS28-216ENST00000533806 MMP21Q8N119 569 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 MDS2Q8NDY4 140 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 OR8K3Q8NH51 312 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 CPT1CQ8TCG5 803 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 SLC2A12Q8TD20 617 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 PPWD1Q96BP3 646 aaKnown RBP12.08□□□□□ -0.48
VPS28-216ENST00000533806 C19orf60Q96EN9 201 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 SENP5Q96HI0 755 aaPredicted RBP12.08□□□□□ -0.48
VPS28-216ENST00000533806 DEFB126Q9BYW3 111 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 ILKAPQ9H0C8 392 aaPredicted RBP12.08□□□□□ -0.48
VPS28-216ENST00000533806 TUBB1Q9H4B7 451 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 PCDHGB6Q9Y5F9 930 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 DNAJC15Q9Y5T4 150 aa12.08□□□□□ -0.48
VPS28-216ENST00000533806 TRAV17A0A0B4J275 112 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 TRBV11-1A0A0K0K1C0 115 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 ARHGAP10A1A4S6 786 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 HRKO00198 91 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 AZIN1O14977 448 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 TM9SF1O15321 606 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 BIRC5O15392 142 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 NEURL1O76050 574 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 WISP1O95388 367 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 F10P00742 488 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 SERPINB4P48594 390 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 SPRED3Q2MJR0 410 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 Q6ZSR9 355 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 ZCCHC23Q6ZST2 131 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 CISD2Q8N5K1 135 aaKnown RBP12.07□□□□□ -0.48
VPS28-216ENST00000533806 OR2T11Q8NH01 316 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 FAM76AQ8TAV0 307 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 ZBTB9Q96C00 473 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 RBM18Q96H35 190 aaKnown RBP12.07□□□□□ -0.48
VPS28-216ENST00000533806 FBXL20Q96IG2 436 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 METTL2AQ96IZ6 378 aaKnown RBP12.07□□□□□ -0.48
VPS28-216ENST00000533806 ZNF681Q96N22 645 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 DGAT2Q96PD7 388 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 SIGLEC12Q96PQ1 595 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 WDR41Q9HAD4 459 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 HEY2Q9UBP5 337 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 PTGDR2Q9Y5Y4 395 aa12.07□□□□□ -0.48
VPS28-216ENST00000533806 CPAMD8Q8IZJ3 1885 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 C1orf226A1L170 272 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 GABRR3A8MPY1 467 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 PCDH7O60245 1069 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 PRAMEF2O60811 474 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 GUCY1B2O75343 617 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 RSL1D1O76021 490 aaKnown RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 ZFAND5O76080 213 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 CLPSP04118 112 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TNNI3P19429 210 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 S1PR1P21453 382 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TIA1P31483 386 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS28-216ENST00000533806 ST13P50502 369 aaKnown RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 XKP51811 444 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 RNF4P78317 190 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 PLIN5Q00G26 463 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 ACSM2AQ08AH3 577 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 MGAT2Q10469 447 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 ZNF750Q32MQ0 723 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 ACSM2BQ68CK6 577 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 ZNF324BQ6AW86 544 aaPredicted RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 HSDL2Q6YN16 418 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 HOMEZQ8IX15 550 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 CLYBLQ8N0X4 340 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 OR4K14Q8NGD5 310 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 C16orf78Q8WTQ4 265 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TLCD1Q96CP7 247 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 SCMH1Q96GD3 660 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 FCRL1Q96LA6 429 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TAAR6Q96RI8 345 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 UTP23Q9BRU9 249 aaKnown RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 PELOQ9BRX2 385 aaKnown RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 OR8D2Q9GZM6 311 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 CXorf21Q9HAI6 301 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TMBIM4Q9HC24 238 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 ASF1BQ9NVP2 202 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 MYOTQ9UBF9 498 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 EXO1Q9UQ84 846 aaKnown RBP12.06□□□□□ -0.48
VPS28-216ENST00000533806 DLGAP4Q9Y2H0 992 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TRAF6Q9Y4K3 522 aa12.06□□□□□ -0.48
VPS28-216ENST00000533806 TMEM233B4DJY2 109 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 ZNF354AO60765 605 aaPredicted RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 ATP1B1P05026 303 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 IL3P08700 152 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 MYZAPP0CAP1 466 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 CPMP14384 443 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 COX7A2P14406 83 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 DRD2P14416 443 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 PORP16435 677 aaPredicted RBP12.05□□□□□ -0.48
VPS28-216ENST00000533806 GSTM5P46439 218 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 HLCSP50747 726 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 SLC18A1P54219 525 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 SLC37A1P57057 533 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 DUSP2Q05923 314 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 FUT7Q11130 342 aa12.05□□□□□ -0.48
VPS28-216ENST00000533806 CASP8Q14790 479 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms