RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PEX16Q9Y5Y5 336 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 A0A1W2PPV9 198 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 TBC1D3BA6NDS4 549 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 CCRL2O00421 344 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 OR10H3O60404 316 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 B4GALT2O60909 372 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 ADAM23O75077 832 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 DRD2P14416 443 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 PSMB5P28074 263 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 FOXD4Q12950 439 aaPredicted RBP20.14■□□□□ 0.81
VPS28-205ENST00000526204 TP53BP2Q13625 1128 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 MAPK11Q15759 364 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 TMEM201Q5SNT2 666 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 PIP5KL1Q5T9C9 394 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 CADM3Q8N126 398 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 CENPOQ9BU64 300 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 LGR4Q9BXB1 951 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 PRSS16Q9NQE7 514 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 TM7SF3Q9NS93 570 aa20.14■□□□□ 0.81
VPS28-205ENST00000526204 IGLON5A6NGN9 336 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 ANHXE9PGG2 379 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 SLC28A2O43868 658 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 MAGEA8P43361 318 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 WSCD2Q2TBF2 565 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 INAVAQ3KP66 663 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 KRT73Q86Y46 540 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 LYSMD2Q8IV50 215 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 SFTPA1Q8IWL2 248 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 TTLQ8NG68 377 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 OR5M11Q96RB7 305 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 RACGAP1Q9H0H5 632 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 SEMA3GQ9NS98 782 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 EHD3Q9NZN3 535 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 C5AR2Q9P296 337 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 CFL2Q9Y281 166 aa20.13■□□□□ 0.81
VPS28-205ENST00000526204 CLEC3AO75596 197 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 EPHX1P07099 455 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 PPP2R1BP30154 601 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 IL12RB1P42701 662 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 CLCNKAP51800 687 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 CRISP3P54108 245 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 RHAGQ02094 409 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 SEC23BQ15437 767 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 OR4C11Q6IEV9 310 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 DEF8Q6ZN54 512 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 UBE3DQ7Z6J8 389 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 WDR36Q8NI36 951 aaKnown RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 KLHL6Q8WZ60 621 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 SMARCD2Q92925 531 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 ASB16Q96NS5 453 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 NRTNQ99748 197 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 TREX2Q9BQ50 279 aaPredicted RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 ABCB10Q9NRK6 738 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 TEX10Q9NXF1 929 aaPredicted RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 MUC22E2RYF6 1773 aaPredicted RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 TCF20Q9UGU0 1960 aaKnown RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 C5orf67F2Z3F1 127 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 FAM227AF5H4B4 570 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 SEMA7AO75326 666 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 ENTPD6O75354 484 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 SLITRK5O94991 958 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 XKP51811 444 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 TSTQ16762 297 aaKnown RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 LEXMQ3ZCV2 418 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 C12orf73Q69YU5 71 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 CASP12Q6UXS9 341 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 ROGDIQ9GZN7 287 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 POLR2J3Q9H1A7 115 aaKnown RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 C11orf16Q9NQ32 467 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 PRDM8Q9NQV8 689 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 TAS2R16Q9NYV7 291 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 ZNF229Q9UJW7 825 aa20.12■□□□□ 0.81
VPS28-205ENST00000526204 GPC6Q9Y625 555 aaPredicted RBP20.12■□□□□ 0.81
VPS28-205ENST00000526204 PNMA8CA0A1B0GUJ8 204 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 MED26O95402 600 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 CSTF2P33240 577 aaKnown RBP eCLIP20.11■□□□□ 0.81
VPS28-205ENST00000526204 CSNK1G2P78368 415 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 NCF4Q15080 339 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 PDGFRLQ15198 375 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 TMEM35AQ53FP2 167 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 KIAA1161Q6NSJ0 714 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 ATCAYQ86WG3 371 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 OR8J1Q8NGP2 316 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 VANGL1Q8TAA9 524 aaPredicted RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 SLC35G5Q96KT7 338 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 IL4I1Q96RQ9 567 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 SPATA5L1Q9BVQ7 753 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 FAIM2Q9BWQ8 316 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 RSPO3Q9BXY4 272 aaPredicted RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 TEX101Q9BY14 249 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 SCHIP1Q9P0W5 487 aaPredicted RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 THAP10Q9P2Z0 257 aaPredicted RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 MKLN1Q9UL63 735 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 RPL36Q9Y3U8 105 aaKnown RBP20.11■□□□□ 0.81
VPS28-205ENST00000526204 A0A0A6YYD5 115 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 LINC01553A4QN01 128 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 H3BN98 237 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 UGT2B17O75795 530 aa20.11■□□□□ 0.81
VPS28-205ENST00000526204 PRDX1Q06830 199 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms