RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	MYOCOS	A0A1B0GUC4	107 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963		A0A1W2PS29	197 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ARGFX	A6NJG6	315 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	TGFBR3L	H3BV60	316 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ATXN7	O15265	892 aa	Predicted RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	FGF17	O60258	216 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	TBX19	O60806	448 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	CCDC22	O60826	627 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	LDB3	O75112	727 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	RECK	O95980	971 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	PRB1	P04280	392 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ITGB2	P05107	769 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	COX7A2	P14406	83 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	HPCAL1	P37235	193 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	CLNS1A	P54105	237 aa	Known RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	RHAG	Q02094	409 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ID2	Q02363	134 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ACTN3	Q08043	901 aa	Predicted RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	CHAF1B	Q13112	559 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	KLF10	Q13118	480 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ZNF750	Q32MQ0	723 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	MINDY4	Q4G0A6	757 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	AGK	Q53H12	422 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	SOWAHC	Q53LP3	525 aa	Predicted RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	MFSD4B	Q5TF39	518 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	OR52E8	Q6IFG1	317 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	FAM180B	Q6P0A1	224 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	R3HCC1L	Q7Z5L2	792 aa	Known RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	RAB43	Q86YS6	212 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	FUNDC1	Q8IVP5	155 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	SCUBE1	Q8IWY4	988 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	OR4N5	Q8IXE1	308 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	APOBEC4	Q8WW27	367 aa	Known RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	SLC39A7	Q92504	469 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	TANK	Q92844	425 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	EXOSC8	Q96B26	276 aa	Known RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	TESC	Q96BS2	214 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	PPCDC	Q96CD2	204 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	MTERF3	Q96E29	417 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ZNF764	Q96H86	408 aa	Predicted RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ZBTB18	Q99592	522 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	VN1R1	Q9GZP7	353 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	WDR54	Q9H977	334 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	MIEF1	Q9NQG6	463 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	PRDM9	Q9NQV7	894 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	EHD3	Q9NZN3	535 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	SH3BP4	Q9P0V3	963 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	MRPS33	Q9Y291	106 aa	Known RBP	11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	CLDN16	Q9Y5I7	305 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	ATRX	P46100	2492 aa		11.19	□□□□□ -0.62
PVT1-215	ENST00000522963	CHD6	Q8TD26	2715 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	FAM234B	A2RU67	622 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	BLACE	A4D250	179 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CLDN4	O14493	209 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CTNS	O60931	367 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	KLF7	O75840	302 aa	Predicted RBP	11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	DCTN3	O75935	186 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CD63	P08962	238 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	C8orf89	P0DMQ9	161 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	LAMP1	P11279	417 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	MAOA	P21397	527 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	PIK3R1	P27986	724 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	RPL3	P39023	403 aa	Known RBP	11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	POLE2	P56282	527 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	HSD17B7	P56937	341 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	FOLH1	Q04609	750 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	DUSP2	Q05923	314 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	SLC13A2	Q13183	592 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	ATP1A4	Q13733	1029 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	SSPN	Q14714	243 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	MPEG1	Q2M385	716 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	PGS1	Q32NB8	556 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	SPANXN4	Q5MJ08	99 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	PCSK4	Q6UW60	755 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	QSOX2	Q6ZRP7	698 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	GK5	Q6ZS86	529 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CAMKMT	Q7Z624	323 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	EXD3	Q8N9H8	876 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	OR2Y1	Q8NGV0	311 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	TSLP	Q969D9	159 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	KLHL29	Q96CT2	875 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	COQ8B	Q96D53	544 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CCDC106	Q9BWC9	280 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	SLC35C2	Q9NQQ7	365 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	NECTIN3	Q9NQS3	549 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	TMEM45A	Q9NWC5	275 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	TAS2R7	Q9NYW3	318 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	CCDC167	Q9P0B6	97 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	NXT1	Q9UKK6	140 aa	Known RBP	11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	UTS2R	Q9UKP6	389 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	MKL2	Q9ULH7	1088 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	MAPRE3	Q9UPY8	281 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	MMACHC	Q9Y4U1	282 aa		11.18	□□□□□ -0.62
PVT1-215	ENST00000522963	ZFHX4	Q86UP3	3567 aa		11.17	□□□□□ -0.62
PVT1-215	ENST00000522963	IGKV3D-11	A0A0A0MRZ8	115 aa		11.17	□□□□□ -0.62
PVT1-215	ENST00000522963	IDS	B3KWA1	339 aa		11.17	□□□□□ -0.62
PVT1-215	ENST00000522963	NR5A2	O00482	541 aa		11.17	□□□□□ -0.62
PVT1-215	ENST00000522963	PEX12	O00623	359 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms