RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ADAMTS14Q8WXS8 1223 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 PDXPQ96GD0 296 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 ZC3HAV1LQ96H79 300 aaKnown RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 PCDH15Q96QU1 1955 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 PIP5K1AQ99755 562 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 APOL2Q9BQE5 337 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 LRRC61Q9BV99 259 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 SPATA16Q9BXB7 569 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 SUDS3Q9H7L9 328 aaPredicted RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 MRPL40Q9NQ50 206 aaKnown RBP6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CYSLTR2Q9NS75 346 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 HACD3Q9P035 362 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CAPN7Q9Y6W3 813 aa6.63□□□□□ -1.35
SDCBP-208ENST00000520228 CHD5Q8TDI0 1954 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 CLEC18AA5D8T8 446 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 INPP4BO15327 924 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 PSMD3O43242 534 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 SEC14L2O76054 403 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 RGS11O94810 467 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 HOXB5P09067 269 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 HOXD3P31249 432 aaPredicted RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ADRA1AP35348 466 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ACTN2P35609 894 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 HMGCLP35914 325 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 GNPDA1P46926 289 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ACADVLP49748 655 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 DUSP3P51452 185 aaPredicted RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 DCDC1P59894 354 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ILKQ13418 452 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 SIX1Q15475 284 aaPredicted RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 OASLQ15646 514 aaKnown RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 HENMT1Q5T8I9 393 aaKnown RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ZDHHC20Q5W0Z9 365 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ZNF549Q6P9A3 640 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 MARK2Q7KZI7 788 aaKnown RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 GLT6D1Q7Z4J2 308 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 TAF8Q7Z7C8 310 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 GKN2Q86XP6 184 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 SLC35F6Q8N357 371 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 TTC30BQ8N4P2 665 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 CCDC89Q8N998 374 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 CLEC18CQ8NCF0 446 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 GPR26Q8NDV2 337 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 OIT3Q8WWZ8 545 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ZBTB9Q96C00 473 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 RTP4Q96DX8 246 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 PERPQ96FX8 193 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 COX14Q96I36 57 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 BBS4Q96RK4 519 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 TBL1YQ9BQ87 522 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ZSCAN5AQ9BUG6 496 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 LRRC40Q9H9A6 602 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 BPIFA1Q9NP55 256 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 HOMER3Q9NSC5 361 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 ANGPTL2Q9UKU9 493 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 GPR34Q9UPC5 381 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 SLC17A4Q9Y2C5 497 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 FAM96BQ9Y3D0 163 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 LSM4Q9Y4Z0 139 aaKnown RBP6.62□□□□□ -1.35
SDCBP-208ENST00000520228 PCDHGA1Q9Y5H4 931 aa6.62□□□□□ -1.35
SDCBP-208ENST00000520228 IGHV4-28A0A0C4DH34 117 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CPED1A4D0V7 1026 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 C2orf81A6NN90 581 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 KDM4EB2RXH2 506 aaPredicted RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 USP17L23D6RBM5 183 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 STX7O15400 261 aaKnown RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 SEC14L5O43304 696 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 BUD23O43709 281 aaKnown RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 SLC25A14O95258 325 aaPredicted RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 AP2A1O95782 977 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 ATP1A1P05023 1023 aaKnown RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 IVLP07476 585 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CBSLP0DN79 551 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 ETFAP13804 333 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 ETS1P14921 441 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CAPN3P20807 821 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 ACP1P24666 158 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 PSMA4P25789 261 aaKnown RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CHATP28329 748 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CBSP35520 551 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 FDFT1P37268 417 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 LMAN1P49257 510 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 COMPP49747 757 aaPredicted RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 PDE1BQ01064 536 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 CCDC173Q0VFZ6 552 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 ILF3Q12906 894 aaKnown RBP eCLIP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 OLIG2Q13516 323 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 DCTN2Q13561 401 aaKnown RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 TAF1AQ15573 450 aaPredicted RBP6.61□□□□□ -1.35
SDCBP-208ENST00000520228 KCTD11Q693B1 232 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 PDPK2PQ6A1A2 396 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 C4orf22Q6V702 233 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 GSTA5Q7RTV2 222 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 LINC00523Q86TU6 105 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 TDRPQ86YL5 185 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 GALNT13Q8IUC8 556 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 KLHDC8BQ8IXV7 354 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 TRAM1L1Q8N609 369 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 BRSK1Q8TDC3 778 aa6.61□□□□□ -1.35
SDCBP-208ENST00000520228 GLYATL1Q969I3 302 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms