RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 OR4A16Q8NH70 328 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPATA22Q8NHS9 363 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VANGL1Q8TAA9 524 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 THAP6Q8TBB0 222 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB3IL1Q8TBN0 382 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM163Q8TC26 289 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC20Q8TCA0 184 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNPT1Q8TCS8 783 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAET1EQ8TD07 263 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDI1Q8WTU0 396 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GLYATL2Q8WU03 294 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC12Q8WUD4 166 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDCD6IPQ8WUM4 868 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBTD2Q8WUN7 234 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM174Q8WUU8 243 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC107Q8WV48 283 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC35F5Q8WV83 523 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPRYD4Q8WW59 207 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SSMEM1Q8WWF3 244 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TCP11Q8WWU5 503 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIBF1Q8WXW3 757 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHYHIPQ92561 330 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDKL2Q92772 493 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SYN2Q92777 582 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PROX1Q92786 737 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GGHQ92820 318 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATOH1Q92858 354 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAP4K1Q92918 833 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TAAR8Q969N4 342 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM46BQ96A09 425 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMIGD2Q96BF3 282 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGK3Q96BR1 496 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EFHD2Q96C19 240 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC45Q96CN5 670 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ORAI1Q96D31 301 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LGALS12Q96DT0 336 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTERF3Q96E29 417 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPDL1Q96EA4 605 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 STAMBPL1Q96FJ0 436 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 COQ2Q96H96 371 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RITA1Q96K30 269 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LMLNQ96KR4 655 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C4orf36Q96KX1 117 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 APOLD1Q96LR9 279 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SGK494Q96LW2 274 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRRC1Q96M27 445 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C12orf66Q96MD2 445 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSMCE3Q96MG7 304 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM20AQ96MK3 541 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VSTM2LQ96N03 204 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSNARE1Q96NA8 513 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF582Q96NG8 517 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPRD1AQ96P16 312 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TSSK2Q96PF2 358 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF385AQ96PM9 386 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 VPS35Q96QK1 796 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ACCSQ96QU6 501 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PANX2Q96RD6 677 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TGS1Q96RS0 853 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB40CQ96S21 281 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 MMS19Q96T76 1030 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT12Q99456 494 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPY6RQ99463 290 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDOQ99489 341 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GFI1Q99684 422 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 OLFM1Q99784 485 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRMT1Q99873 361 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SH3GL1Q99961 368 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNS3Q9BQ31 491 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 BPIFA3Q9BQP9 254 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 UQCC2Q9BRT2 126 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 CENPKQ9BS16 269 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM175Q9BSA9 504 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 C16orf70Q9BSU1 422 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 THAP7Q9BT49 309 aaPredicted RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LMF2Q9BU23 707 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NDUFAF3Q9BU61 184 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 WRAP53Q9BUR4 548 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ALG12Q9BV10 488 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EDEM2Q9BV94 578 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRIM62Q9BVG3 475 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NUP58Q9BVL2 599 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 FNDC11Q9BVV2 318 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RBM24Q9BX46 236 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPATA16Q9BXB7 569 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAB11FIP5Q9BXF6 653 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PINK1Q9BXM7 581 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERVK-6Q9BXR3 956 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 GON7Q9BXV9 100 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 PARD6BQ9BYG5 372 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRRC2Q9BYS8 371 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD60Q9BZ19 345 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 DCLK3Q9C098 648 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 EGLN1Q9GZT9 426 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 IL22Q9GZX6 179 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZMYND12Q9H0C1 365 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSRP1Q9H0G5 558 aaKnown RBP0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 HDHD2Q9H0R4 259 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIRPDQ9H106 197 aa0.54□□□□□ -2.32
RNU4-54P-201ENST00000516428 SDCBP2Q9H190 292 aa0.54□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms