RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 LIPGQ9Y5X9 500 aa19.4■□□□□ 0.7
SQSTM1-210ENST00000506042 CELSR1Q9NYQ6 3014 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 C15orf38-AP3S2A0A0A6YYH1 394 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 A0A0G2JMM0 328 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 A0A1W2PPB8 328 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 A0A1W2PRS3 328 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 KIR3DP1A8MWS1 328 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 EIF3HO15372 352 aaKnown RBP eCLIP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 FAM155BO75949 473 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 GSTA2P09210 222 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 CD1DP15813 335 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 GDF1P27539 372 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 PIGAP37287 484 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 RAB10P61026 200 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF791Q3KP31 576 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 FLYWCH1Q4VC44 716 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 CYP20A1Q6UW02 462 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 SCIMPQ6UWF3 145 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 CCDC91Q7Z6B0 441 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 MYLK4Q86YV6 388 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 LAS2Q8IYD9 372 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF473Q8WTR7 871 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 SREK1Q8WXA9 508 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 RBBP8Q99708 897 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 CXXC4Q9H2H0 198 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 PLAC1Q9HBJ0 212 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 RNF14Q9UBS8 474 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF629Q9UEG4 869 aaPredicted RBP19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 HIVEP1P15822 2718 aa19.39■□□□□ 0.69
SQSTM1-210ENST00000506042 CCDC189A1A4V9 331 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 SUPT3HB4E1H0 165 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 E7ESA3 106 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 K7EPI3 171 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 SYT5O00445 386 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 TAPBPO15533 448 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 SUPT3HO75486 399 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 SNX4O95219 450 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 ETHE1O95571 254 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 TGFB1P01137 390 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 KRT15P19012 456 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 PTX3P26022 381 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 PIK3CBP42338 1070 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 PIK3CGP48736 1102 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 MASP1P48740 699 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 IGLV3-21P80748 117 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 TNFRSF17Q02223 184 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 VN1R5Q7Z5H4 357 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 PACS2Q86VP3 889 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 ULK2Q8IYT8 1036 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 LRRC25Q8N386 305 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 RIT1Q92963 219 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 RNASE6Q93091 150 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 ALPK1Q96QP1 1244 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 GPR22Q99680 433 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 TMUB1Q9BVT8 246 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF407Q9C0G0 2248 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 SNX15Q9NRS6 342 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 RASSF1Q9NS23 344 aa19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 CCM2LQ9NUG4 571 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-210ENST00000506042 DNAJC13O75165 2243 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 MYOCOSA0A1B0GUC4 107 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 PHGDHO43175 533 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 DIAPH2O60879 1101 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 FOSL1P15407 271 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 KLK2P20151 261 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 BMP5P22003 454 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 GALNSP34059 522 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 ID2Q02363 134 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 DDX39BQ13838 428 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 SPRED3Q2MJR0 410 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 DEPDC1Q5TB30 811 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 PRAMEF20Q5VT98 475 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 RTL6Q6ICC9 239 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 GRHL2Q6ISB3 625 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 CAPN12Q6ZSI9 719 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 CTAGE3PQ8IX95 158 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 ZCCHC7Q8N3Z6 543 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF321PQ8N8H1 164 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 OR7G3Q8NG95 312 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 DIO2Q92813 273 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 ANKRD9Q96BM1 317 aaPredicted RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 PWWP2AQ96N64 755 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 SECISBP2Q96T21 854 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 MTO1Q9Y2Z2 717 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 SAR1BQ9Y6B6 198 aa19.37■□□□□ 0.69
SQSTM1-210ENST00000506042 ANKRD33BA6NCL7 494 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 FGF17O60258 216 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 IGKV3-11P04433 115 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 FBXO45P0C2W1 286 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 CRABP2P29373 138 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 TIMP3P35625 211 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 HERVK_113P63132 956 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ERVK-8P63133 956 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 RCAN2Q14206 197 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF267Q14586 743 aaPredicted RBP19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 CEBPEQ15744 281 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 GRTP1Q5TC63 336 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 LIPJQ5W064 366 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 ZNF793Q6ZN11 406 aa19.36■□□□□ 0.69
SQSTM1-210ENST00000506042 CYS1Q717R9 158 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms