RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 OSGEPL1Q9H4B0 414 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 XKR8Q9H6D3 395 aa15.71■□□□□ 0.11
CCDC88B-210ENST00000494566 FOXE1O00358 373 aaPredicted RBP15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 GPX5O75715 221 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 PCDH8O95206 1070 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 MED26O95402 600 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 OR2B6P58173 313 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 E2F2Q14209 437 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 IFI44LQ53G44 452 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 SHFQ7M4L6 423 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 CPA6Q8N4T0 437 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 WFIKKN2Q8TEU8 576 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF556Q9HAH1 456 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 HCN2Q9UL51 889 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 PADI2Q9Y2J8 665 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC27A6Q9Y2P4 619 aa15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 YARS2Q9Y2Z4 477 aaKnown RBP15.71■□□□□ 0.1
CCDC88B-210ENST00000494566 TTC36A6NLP5 189 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 CLDN24A6NM45 220 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ARHGAP33O14559 1287 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 PRKRAO75569 313 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 KRT8P05787 483 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 HNRNPA1P09651 372 aaKnown RBP eCLIP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 CLEC2LP0C7M8 214 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF24P17028 368 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 TEAD4Q15561 434 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ADCK2Q7Z695 626 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 AMZ2Q86W34 360 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ZFP41Q8N8Y5 198 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 EXOSC8Q96B26 276 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 EPYCQ99645 322 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 RSPO3Q9BXY4 272 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 FBXL12Q9NXK8 326 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 SERGEFQ9UGK8 458 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 CORO2BQ9UQ03 480 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 SNRNP200O75643 2136 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 F5P12259 2224 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ENTPD6O75354 484 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 PPIBP23284 216 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 PCDH1Q08174 1060 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 SUSD6Q92537 303 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 FGF13Q92913 245 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ZNF486Q96H40 463 aaPredicted RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 EPHX3Q9H6B9 360 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 MYNNQ9NPC7 610 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 MBNL1Q9NR56 388 aaKnown RBP15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 TOR4AQ9NXH8 423 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 PCDHGA2Q9Y5H1 932 aa15.7■□□□□ 0.1
CCDC88B-210ENST00000494566 ANKDD1BA6NHY2 528 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 IDH3BO43837 385 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 NTN1O95631 604 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 BCHEP06276 602 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TNNI3P19429 210 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 RPS19P39019 145 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 CLCNKAP51800 687 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 CXCR4P61073 352 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 PDE7AQ13946 482 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 LIPKQ5VXJ0 399 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 DEF8Q6ZN54 512 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 SLC9B2Q86UD5 537 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 IPCEF1Q8WWN9 437 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 WDR34Q96EX3 536 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 PRR14Q9BWN1 585 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 CARD8Q9Y2G2 431 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 KIF26AQ9ULI4 1882 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 C2orf16Q68DN1 1984 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TRBV4-1A0A0J9YWV2 114 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 PI15O43692 258 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 SNX4O95219 450 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 GADD45GO95257 159 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 ALPPL2P10696 532 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TNFSF8P32971 234 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 BAK1Q16611 211 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 CEACAM20Q6UY09 585 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 FAM129CQ86XR2 697 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 HORMAD2Q8N7B1 307 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 FBXO15Q8NCQ5 510 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TMIEQ8NEW7 156 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 SP7Q8TDD2 431 aaPredicted RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 UBASH3BQ8TF42 649 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 RAD51AP1Q96B01 352 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 METTL2AQ96IZ6 378 aaKnown RBP15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TMEM245Q9H330 911 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 PLEKHM1Q9Y4G2 1056 aa15.69■□□□□ 0.1
CCDC88B-210ENST00000494566 TRBC2A0A5B9 178 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 GLOD5A6NK44 160 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 MID1O15344 667 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 HOXB3P14651 431 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 MAPK12P53778 367 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 UGT2B15P54855 530 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 EEF1A2Q05639 463 aaKnown RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 WSCD2Q2TBF2 565 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 PDZD3Q86UT5 571 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 C17orf64Q86WR6 236 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 CAMKK1Q8N5S9 505 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 GOT1L1Q8NHS2 421 aaPredicted RBP15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 HCAR2Q8TDS4 363 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 CHFRQ96EP1 664 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 ASB16Q96NS5 453 aa15.68■□□□□ 0.1
CCDC88B-210ENST00000494566 SDHCQ99643 169 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms