RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	CDYL2	Q8N8U2	506 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	L3MBTL4	Q8NA19	623 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	FAM76A	Q8TAV0	307 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	RAB3IL1	Q8TBN0	382 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	SELENOM	Q8WWX9	145 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	WDR34	Q96EX3	536 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	CMTM7	Q96FZ5	175 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	ZNF382	Q96SR6	550 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	SLX1A	Q9BQ83	275 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	ANKH	Q9HCJ1	492 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	PLA2G3	Q9NZ20	509 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	TRPS1	Q9UHF7	1281 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	8.22	□□□□□ -1.09
USP4-213	ENST00000488520	FIS1	Q9Y3D6	152 aa		8.22	□□□□□ -1.09
USP4-213	ENST00000488520	DNAJC13	O75165	2243 aa		8.21	□□□□□ -1.09
USP4-213	ENST00000488520	LOC105369274	A0A096LPK9	316 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	IGKV1-8	A0A0C4DH67	115 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	LOC102723532	A0A0G2JNH3	316 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CCL21	O00585	134 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	FFAR3	O14843	346 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	GPR42	O15529	346 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CLEC3A	O75596	197 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	TGFB1	P01137	390 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SERPINA6	P08185	405 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	COX6B1	P14854	86 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ITGAX	P20702	1163 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	BGN	P21810	368 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	BCL6	P41182	706 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	PIK3CB	P42338	1070 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	TDGF1P3	P51864	188 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ARG2	P78540	354 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF33B	Q06732	778 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	GALNT1	Q10472	559 aa	Predicted RBP	8.21	□□□□□ -1.1
USP4-213	ENST00000488520	HERC3	Q15034	1050 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	AP5B1	Q2VPB7	878 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ARL13A	Q5H913	290 aa	Predicted RBP	8.21	□□□□□ -1.1
USP4-213	ENST00000488520	FRG2	Q64ET8	278 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	FRMPD2B	Q6IN97	320 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	TRIM40	Q6P9F5	258 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	GFRAL	Q6UXV0	394 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZCCHC23	Q6ZST2	131 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	FRMD7	Q6ZUT3	714 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	COX15	Q7KZN9	410 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	RNF44	Q7L0R7	432 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	MRGPRG	Q86SM5	289 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CRLF3	Q8IUI8	442 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	LAS2	Q8IYD9	372 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	OR4N4	Q8N0Y3	316 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF740	Q8NDX6	193 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	OR7G3	Q8NG95	312 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	OR11G2	Q8NGC1	345 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	OR52B6	Q8NGF0	335 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	RELT	Q969Z4	430 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	RGMA	Q96B86	450 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	C8orf44	Q96CB5	159 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CCDC120	Q96HB5	630 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	QRFPR	Q96P65	431 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	FRG2B	Q96QU4	278 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	OR2A5	Q96R48	311 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	TAAR6	Q96RI8	345 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SERPINI1	Q99574	410 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SARG	Q9BW04	601 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SHCBP1L	Q9BZQ2	653 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ROGDI	Q9GZN7	287 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	RHBG	Q9H310	441 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	GSTO2	Q9H4Y5	243 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	COPS7B	Q9H9Q2	264 aa	Predicted RBP	8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF160	Q9HCG1	818 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZBTB26	Q9HCK0	441 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CUTC	Q9NTM9	273 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	THAP1	Q9NVV9	213 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	PSD3	Q9NYI0	1048 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	PTGFRN	Q9P2B2	879 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SUCO	Q9UBS9	1254 aa	Known RBP	8.21	□□□□□ -1.1
USP4-213	ENST00000488520	CTSF	Q9UBX1	484 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF490	Q9ULM2	529 aa	Predicted RBP	8.21	□□□□□ -1.1
USP4-213	ENST00000488520	SH2B3	Q9UQQ2	575 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	TRAF6	Q9Y4K3	522 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	ASB1	Q9Y576	335 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	MAU2	Q9Y6X3	613 aa		8.21	□□□□□ -1.1
USP4-213	ENST00000488520	MAP1A	P78559	2803 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520		A0A1B0GX78	115 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	SLC28A1	O00337	649 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	FOXE1	O00358	373 aa	Predicted RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	DSCR3	O14972	297 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	AZIN1	O14977	448 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	RGS14	O43566	566 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	MYO1D	O94832	1006 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	UNC5C	O95185	931 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	FGF4	P08620	206 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	DHRS4L1	P0CG22	281 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	RPL14	P50914	215 aa	Known RBP	8.2	□□□□□ -1.1
USP4-213	ENST00000488520	MFAP5	Q13361	173 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	FAM53B	Q14153	422 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	GGTA1P	Q4G0N0	100 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	TMEM35A	Q53FP2	167 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	VWA2	Q5GFL6	755 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	TOR1AIP1	Q5JTV8	583 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	SPDYA	Q5MJ70	313 aa		8.2	□□□□□ -1.1
USP4-213	ENST00000488520	SH2D4B	Q5SQS7	431 aa		8.2	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms