RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 CBX6O95503 412 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 MT-CYBP00156 380 aaPredicted RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SERPINC1P01008 464 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 LDLRP01130 860 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CAPN1P07384 714 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 H2AFZP0C0S5 128 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 RNF224P0DH78 156 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 HOXD3P31249 432 aaPredicted RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 TNFSF8P32971 234 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 RORAP35398 523 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 GJC1P36383 396 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SPAM1P38567 509 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 HADHAP40939 763 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ART1P52961 327 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CTSCP53634 463 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 FAM3BP58499 235 aaPredicted RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ZBED6P86452 979 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 EEF1A2Q05639 463 aaKnown RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CHAF1BQ13112 559 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ITGA9Q13797 1035 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 NFE2L1Q14494 772 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 HNF4GQ14541 408 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 MAPKAPK3Q16644 382 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 IZUMO4Q1ZYL8 232 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 LDLRAP1Q5SW96 308 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 LCN10Q6JVE6 187 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 PPP4R4Q6NUP7 873 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 TMEM220Q6QAJ8 160 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 IGFL3Q6UXB1 125 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CERS6Q6ZMG9 384 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 H2AFVQ71UI9 128 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 BZW1Q7L1Q6 419 aaKnown RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ZNF367Q7RTV3 350 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 OOSP2Q86WS3 158 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 TMEM126BQ8IUX1 230 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CADM3Q8N126 398 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 TTC30BQ8N4P2 665 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ZBTB2Q8N680 514 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ENDOVQ8N8Q3 282 aaKnown RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 RASGEF1AQ8N9B8 481 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 DDHD1Q8NEL9 900 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 FDCSPQ8NFU4 85 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SPATA22Q8NHS9 363 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 CPT1BQ92523 772 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 RAPGEF5Q92565 580 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 ADAD1Q96M93 576 aaKnown RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 AGAP3Q96P47 875 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 OLFM3Q96PB7 478 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 IP6K3Q96PC2 410 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 NUDT9Q9BW91 350 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 MAK16Q9BXY0 300 aaKnown RBP3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 KIR3DX1Q9H7L2 352 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 FANCEQ9HB96 536 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 BPIFA1Q9NP55 256 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 GPR83Q9NYM4 423 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 HACD3Q9P035 362 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 IL17CQ9P0M4 197 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 FAM153AQ9UHL3 310 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SLC24A2Q9UI40 661 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 NENFQ9UMX5 172 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SNX7Q9UNH6 387 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 PSMD13Q9UNM6 376 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 HEY1Q9Y5J3 304 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 COLEC10Q9Y6Z7 277 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 NUP210LQ5VU65 1888 aa3.79□□□□□ -1.8
SNRNP40-205ENST00000486941 SPENQ96T58 3664 aaKnown RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 GLYATL1P3A0A0U1RQE8 302 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 C17orf113A0A1B0GUU1 675 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 LRRD1A4D1F6 860 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 OR6C74A6NCV1 312 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 SLC9B1P1A6NJY1 282 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 A6NL46 340 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 OR2AG2A6NM03 316 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 AGAP14A8MT82 685 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 C9J4A7 227 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 GAPDHSO14556 408 aaPredicted RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 APOL1O14791 398 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 UGT1A9O60656 530 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 KLF7O75840 302 aaPredicted RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 CLDN1O95832 211 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 MBD3O95983 291 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 IGHEP01854 428 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 SLC4A1P02730 911 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 HBQ1P09105 142 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 SLC35G4P0C7Q5 338 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 UGT1A6P19224 532 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 HLA-DPA1P20036 260 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 MSH3P20585 1137 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 CDH3P22223 829 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 UGT1A1P22309 533 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 UGT1A4P22310 534 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 PTPN3P26045 913 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 PRDX3P30048 256 aaKnown RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 HNRNPH3P31942 346 aaKnown RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 DCTP40126 519 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 TNNT3P45378 269 aaPredicted RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 NR2C2P49116 596 aa3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 KPNA2P52292 529 aaKnown RBP3.78□□□□□ -1.8
SNRNP40-205ENST00000486941 TAS2R50P59544 299 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms