RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ARGLU1Q9NWB6 273 aaPredicted RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 ANKRD10Q9NXR5 420 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ABI3Q9P2A4 366 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 ZNF223Q9UK11 482 aaPredicted RBP13.76□□□□□ -0.21
USP4-212ENST00000486549 PCDHA9Q9Y5H5 950 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 TENM4Q6N022 2769 aa13.76□□□□□ -0.21
USP4-212ENST00000486549 SPENQ96T58 3664 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 FLNBO75369 2602 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 MYO18BQ8IUG5 2567 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 A0A1W2PS29 197 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 SERTM1A2A2V5 107 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 GABRR3A8MPY1 467 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 VPS4BO75351 444 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 LYPLA1O75608 230 aaPredicted RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 IL3P08700 152 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 NEFHP12036 1026 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 ARRB2P32121 409 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 MAGOHP61326 146 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 TLR1Q15399 786 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 CHI3L2Q15782 390 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 TRIM46Q7Z4K8 759 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 RPS19BP1Q86WX3 136 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 DDIASQ8IXT1 998 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 ST13P4Q8IZP2 240 aaPredicted RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 MORN4Q8NDC4 146 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 OR1N1Q8NGS0 311 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 SLC2A12Q8TD20 617 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 MGARPQ8TDB4 240 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 CNPPD1Q9BV87 410 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 FAIM2Q9BWQ8 316 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 COPS7AQ9UBW8 275 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 VPS4AQ9UN37 437 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 PPIEQ9UNP9 301 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 DLGAP4Q9Y2H0 992 aa13.75□□□□□ -0.21
USP4-212ENST00000486549 POLR3HQ9Y535 204 aaPredicted RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 PRRC2CQ9Y520 2896 aaKnown RBP13.75□□□□□ -0.21
USP4-212ENST00000486549 ASH1LQ9NR48 2969 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 TMEM120BA0PK00 339 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 C1orf226A1L170 272 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 OR5H15A6NDH6 313 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 HRKO00198 91 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 BIRC5O15392 142 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 RGS14O43566 566 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 DYRK3O43781 588 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 PRKNO60260 465 aaPredicted RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 ERAL1O75616 437 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 RSL1D1O76021 490 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 HSPA4LO95757 839 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 DDAH2O95865 285 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 ANXA4P09525 319 aaPredicted RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 LINC00032P0C843 101 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 SERPINB5P36952 375 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TNFSF10P50591 281 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 GPR143P51810 404 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 XKP51811 444 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TRA2BP62995 288 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 OC90Q02509 493 aaPredicted RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 BIKQ13323 160 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TUBA3CQ13748 450 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 NR6A1Q15406 480 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 IGFBP7Q16270 282 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 ZNF750Q32MQ0 723 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 HHATQ5VTY9 493 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 SLC48A1Q6P1K1 146 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TUBA3EQ6PEY2 450 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 CLYBLQ8N0X4 340 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 C7orf57Q8NEG2 295 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 OR4K14Q8NGD5 310 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 CPT1CQ8TCG5 803 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 C16orf78Q8WTQ4 265 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TWIST2Q8WVJ9 160 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 HAS2Q92819 552 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 MIB2Q96AX9 1013 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 KLHL29Q96CT2 875 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 PELOQ9BRX2 385 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 RNF32Q9H0A6 362 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TUBB1Q9H4B7 451 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 LIN28AQ9H9Z2 209 aaKnown RBP13.74□□□□□ -0.21
USP4-212ENST00000486549 HEY2Q9UBP5 337 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 TRAF6Q9Y4K3 522 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 PCDHGA10Q9Y5H3 936 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 DNAJC15Q9Y5T4 150 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 CROCCQ5TZA2 2017 aa13.74□□□□□ -0.21
USP4-212ENST00000486549 SLC28A1O00337 649 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 FCHO1O14526 889 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 PIP5K1BO14986 540 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ITM2AO43736 263 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 SEC22BO75396 215 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 SKAP2O75563 359 aaPredicted RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 ZFAND5O76080 213 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 SERPINE1P05121 402 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 DHRS4L1P0CG22 281 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 SLC35E2P0CK97 266 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 BGNP21810 368 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 MLF1P58340 268 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ERVK-8P63133 956 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 ZNF267Q14586 743 aaPredicted RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 INPP5JQ15735 1006 aaPredicted RBP13.73□□□□□ -0.21
USP4-212ENST00000486549 CES4AQ5XG92 561 aa13.73□□□□□ -0.21
USP4-212ENST00000486549 FAM180BQ6P0A1 224 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms