RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 SCUBE1Q8IWY4 988 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 C10orf67Q8IYJ2 551 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ST13P4Q8IZP2 240 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 PLPP5Q8NEB5 264 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ZNF675Q8TD23 568 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 ADAMTS14Q8WXS8 1223 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 EXOSC8Q96B26 276 aaKnown RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 CNRIP1Q96F85 164 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 AMDHD1Q96NU7 426 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 NANOGQ9H9S0 305 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 C3orf14Q9HBI5 128 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 PRTFDC1Q9NRG1 225 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 NTMQ9P121 344 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 PTGFRNQ9P2B2 879 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 TMEM181Q9P2C4 612 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 DHCR7Q9UBM7 475 aaKnown RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 TRPC4Q9UBN4 977 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 L3MBTL1Q9Y468 752 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 TMEM184BQ9Y519 407 aaPredicted RBP9.56□□□□□ -0.88
USP39-215ENST00000481409 PCDHB14Q9Y5E9 798 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 DNAH14Q0VDD8 3507 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 MUC6Q6W4X9 2439 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 SCN3AQ9NY46 2000 aa9.56□□□□□ -0.88
USP39-215ENST00000481409 VPS13AQ96RL7 3174 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CROCCQ5TZA2 2017 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 TTC36A6NLP5 189 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 C9J4A7 227 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 C9JVG2 144 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CLIC1O00299 241 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CASC3O15234 703 aaKnown RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 DYRK3O43781 588 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 PLOD3O60568 738 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 C6orf47O95873 294 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 B3GALT4O96024 378 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CCL4P13236 92 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 HSD17B1P14061 328 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 GPX2P18283 190 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 PTPN6P29350 595 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 GPC1P35052 558 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 PGM1P36871 562 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 NOVA1P51513 510 aaKnown RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 HBA1P69905 142 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 OLR1P78380 273 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 SIM1P81133 766 aaPredicted RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 FOLH1Q04609 750 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 STX4Q12846 297 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 BNIP2Q12982 314 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 SLC13A2Q13183 592 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 SPRED3Q2MJR0 410 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 C6orf163Q5TEZ5 329 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ANKRD26P1Q6NSI1 321 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ZCCHC12Q6PEW1 402 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ZNF621Q6ZSS3 439 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 DGLUCYQ7Z3D6 616 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 SERPINA11Q86U17 422 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 FBXW8Q8N3Y1 598 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 OR5T3Q8NGG3 340 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 OR56A1Q8NGH5 318 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CIDECQ96AQ7 238 aaPredicted RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 NACC2Q96BF6 587 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ANKRD9Q96BM1 317 aaPredicted RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 MIEF2Q96C03 454 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 RBM18Q96H35 190 aaKnown RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 PEX11GQ96HA9 241 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CSF3RQ99062 836 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CTRCQ99895 268 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ECSITQ9BQ95 431 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 THTPAQ9BU02 230 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CADM1Q9BY67 442 aaKnown RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 ULBP3Q9BZM4 244 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 GLIPR2Q9H4G4 154 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 TPT1P8Q9HAU6 139 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 LANCL2Q9NS86 450 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 VAPAQ9P0L0 249 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 HCN3Q9P1Z3 774 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 IFT80Q9P2H3 777 aaPredicted RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 SUCOQ9UBS9 1254 aaKnown RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.55□□□□□ -0.88
USP39-215ENST00000481409 RAPGEFL1Q9UHV5 662 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 ZNF451Q9Y4E5 1061 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 NUP210LQ5VU65 1888 aa9.55□□□□□ -0.88
USP39-215ENST00000481409 CUL9Q8IWT3 2517 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 IGKV3D-11A0A0A0MRZ8 115 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 GLOD5A6NK44 160 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 VSTM2BA6NLU5 285 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 EMC8O43402 210 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 FGF17O60258 216 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 CIB2O75838 187 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 STAMBPO95630 424 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 CPSF4O95639 269 aaKnown RBP9.54□□□□□ -0.88
USP39-215ENST00000481409 AGR2O95994 175 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 IGHEP01854 428 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 RAB40ALP0C0E4 278 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 CCNYL3P0C7X3 344 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 NQO1P15559 274 aaKnown RBP9.54□□□□□ -0.88
USP39-215ENST00000481409 CD1EP15812 388 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 ME2P23368 584 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 STT3AP46977 705 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 OR1D4P47884 311 aa9.54□□□□□ -0.88
USP39-215ENST00000481409 CCT3P49368 545 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms