RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CPSF6Q16630 551 aaKnown RBP eCLIP14.09□□□□□ -0.15
LIMS3-203ENST00000480744 WHAMMP3Q1A5X7 153 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 GXYLT1Q4G148 440 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 PIGGQ5H8A4 983 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 LIPJQ5W064 366 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 C9orf40Q8IXQ3 194 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 RHEBL1Q8TAI7 183 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 SLC22A8Q8TCC7 542 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 TANKQ92844 425 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 REPS1Q96D71 796 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 ART5Q96L15 291 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 GAL3ST4Q96RP7 486 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 UCK2Q9BZX2 261 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 ENKD1Q9H0I2 346 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 LDAHQ9H6V9 325 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 EXO5Q9H790 373 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 TUBA8Q9NY65 449 aaPredicted RBP14.09□□□□□ -0.15
LIMS3-203ENST00000480744 TNFRSF10DQ9UBN6 386 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 PCDHGA11Q9Y5H2 935 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 CSMD2Q7Z408 3487 aa14.09□□□□□ -0.15
LIMS3-203ENST00000480744 ADGRG4Q8IZF6 3080 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 A0A096LPK6 155 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 GLOD5A6NK44 160 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 BCKDKO14874 412 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 OR10H2O60403 315 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 EEDO75530 441 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 CELA3AP09093 270 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 POU3F2P20265 443 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 PTX3P26022 381 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 TYK2P29597 1187 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 MAN2A2P49641 1150 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ALDH18A1P54886 795 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 HERVK_113P63132 956 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ERVK-8P63133 956 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 GUCY2DQ02846 1103 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 CKAP4Q07065 602 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 GTF2H2Q13888 395 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ZNF267Q14586 743 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ACAP2Q15057 778 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 MPEG1Q2M385 716 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 PRAMEF20Q5VT98 475 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 C8orf74Q6P047 294 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 GTF2H2CQ6P1K8 395 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 KLC3Q6P597 504 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 CYP20A1Q6UW02 462 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ACAD11Q709F0 780 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 TRILQ7L0X0 811 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 GOLGA7Q7Z5G4 137 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 CCDC91Q7Z6B0 441 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ZCCHC7Q8N3Z6 543 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 NOA1Q8NC60 698 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 FAM13CQ8NE31 585 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 OR10Q1Q8NGQ4 319 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 LILRB4Q8NHJ6 448 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 NUBPLQ8TB37 319 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 C14orf79Q96F83 325 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 FBXL20Q96IG2 436 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ERVK-6Q9BXR3 956 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 VPS11Q9H270 941 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 IPPKQ9H8X2 491 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 KCNJ16Q9NPI9 418 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 SEMA4BQ9NPR2 832 aaPredicted RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 LYARQ9NX58 379 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ACAD8Q9UKU7 415 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 ERVK-19Q9WJR5 959 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.08□□□□□ -0.16
LIMS3-203ENST00000480744 CCDC168Q8NDH2 2452 aa14.08□□□□□ -0.16
LIMS3-203ENST00000480744 IQANK1A0A1B0GTG1 560 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 HMX2A2RU54 273 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 FIGNL2A6NMB9 653 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 WASHC1A8K0Z3 465 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 KIF2AO00139 706 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-203ENST00000480744 KLHL2O95198 593 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SIX3O95343 332 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-203ENST00000480744 IGHG3P01860 377 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 IGKV3-11P04433 115 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 NR2F6P10588 404 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 ACVR2AP27037 513 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 PIK3CGP48736 1102 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SERPINB8P50452 374 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 NEK2P51955 445 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 KCNJ2P63252 427 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 BIKQ13323 160 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SLC10A1Q14973 349 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SLC22A10Q63ZE4 541 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 RNF111Q6ZNA4 994 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SLC29A4Q7RTT9 530 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 ST13P4Q8IZP2 240 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-203ENST00000480744 ATP6V1E2Q96A05 226 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 SPACA9Q96E40 222 aaPredicted RBP14.07□□□□□ -0.16
LIMS3-203ENST00000480744 PELOQ9BRX2 385 aaKnown RBP14.07□□□□□ -0.16
LIMS3-203ENST00000480744 WDR41Q9HAD4 459 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 ALKBH4Q9NXW9 302 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 RNF11Q9Y3C5 154 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 EXPH5Q8NEV8 1989 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 F8P00451 2351 aa14.07□□□□□ -0.16
LIMS3-203ENST00000480744 A0A1W2PR48 441 aa14.06□□□□□ -0.16
LIMS3-203ENST00000480744 OR14I1A6ND48 311 aa14.06□□□□□ -0.16
LIMS3-203ENST00000480744 H0YIV9 168 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms