RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 DNAJB6O75190 326 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 STK16O75716 305 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM155BO75949 473 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 LDLRP01130 860 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CRYABP02511 175 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 C1QAP02745 245 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 LTA4HP09960 611 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 RNF224P0DH78 156 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 MAOAP21397 527 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CRABP2P29373 138 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 HNRNPH1P31943 449 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 PER3P56645 1201 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC26A5P58743 744 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC7A5Q01650 507 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 GTF3C1Q12789 2109 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 TRADDQ15628 312 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 HIST2H2ACQ16777 129 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 FBXO48Q5FWF7 155 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 XKR6Q5GH73 641 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 PAGE2BQ5JRK9 111 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF324BQ6AW86 544 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 FCRLBQ6BAA4 426 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 HIST2H2AA3Q6FI13 130 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 LRRC70Q7Z2Q7 622 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CCDC91Q7Z6B0 441 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CMC1Q7Z7K0 106 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CTAGE6Q86UF2 777 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CRLF3Q8IUI8 442 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 LGI4Q8N135 537 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 BEST3Q8N1M1 668 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 CA13Q8N1Q1 262 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 HORMAD2Q8N7B1 307 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 STAG3L4Q8TBR4 150 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ADAMTS18Q8TE60 1221 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 NR4A3Q92570 626 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 EXT2Q93063 718 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 MS4A6EQ96DS6 147 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 WDR34Q96EX3 536 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 C16orf45Q96MC5 204 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 UTP23Q9BRU9 249 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 EFCAB11Q9BUY7 163 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 NPLQ9BXD5 320 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 REXO4Q9GZR2 422 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 RHBGQ9H310 441 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ALG9Q9H6U8 611 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 NMRAL1Q9HBL8 299 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 NUDT4Q9NZJ9 180 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 SUCOQ9UBS9 1254 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 ERRFI1Q9UJM3 462 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 PTBP2Q9UKA9 531 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 OSGIN2Q9Y236 505 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 MMACHCQ9Y4U1 282 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 PCDHGB6Q9Y5F9 930 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 NAV2Q8IVL1 2488 aa6.36□□□□□ -1.39
CCDC88A-213ENST00000476903 UTP20O75691 2785 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 A0A087X1B8 175 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 IGKV3D-11A0A0A0MRZ8 115 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TCRBV16S1A1N1A0A5B0 115 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ESYT3A0FGR9 886 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 CCDC189A1A4V9 331 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 A1L4Q6 167 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SYNDIG1LA6NDD5 238 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 GABRR3A8MPY1 467 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SYCE1LA8MT33 242 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SUPT3HB4E1H0 165 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 C4orf51C9J302 202 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 FAM227AF5H4B4 570 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 CLDN4O14493 209 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 FCHO1O14526 889 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 B3GALT2O43825 422 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 KERAO60938 352 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SUPT3HO75486 399 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 URI1O94763 535 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 STSP08842 583 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SLC35E2BP0CK96 405 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TFEBP19484 476 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 PHBP35232 272 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TDGF1P3P51864 188 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 PLA2G16P53816 162 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 RAB38P57729 211 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 BTG2P78543 158 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 IRF8Q02556 426 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 GUCY2DQ02846 1103 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TGM3Q08188 693 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TUBA3CQ13748 450 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 DOC2AQ14183 400 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 EFTUD2Q15029 972 aaKnown RBP eCLIP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 OR1C1Q15619 314 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TBCCQ15814 346 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 WHAMMP3Q1A5X7 153 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ZNF766Q5HY98 468 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TRIM40Q6P9F5 258 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 TUBA3EQ6PEY2 450 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 MAMDC2Q7Z304 686 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 ISCA2Q86U28 154 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SCUBE1Q8IWY4 988 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 AMER2Q8N7J2 671 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 MDS2Q8NDY4 140 aa6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 SRFBP1Q8NEF9 429 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-213ENST00000476903 OR2L5Q8NG80 312 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms