RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MIPOL1Q8TD10 442 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 TMED6Q8WW62 240 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PIK3R3Q92569 461 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 IGSF21Q96ID5 467 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PIWIL1Q96J94 861 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 PRICKLE1Q96MT3 831 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 VSTM2LQ96N03 204 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 CCNL2Q96S94 520 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 S1PR3Q99500 378 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 TMEM43Q9BTV4 400 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 WRAP53Q9BUR4 548 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 NUSAP1Q9BXS6 441 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 MAGT1Q9H0U3 335 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 RPAP3Q9H6T3 665 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 KAT8Q9H7Z6 458 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 MED20Q9H944 212 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 MEAF6Q9HAF1 191 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 KCNK13Q9HB14 408 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 APOBEC3GQ9HC16 384 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 APMAPQ9HDC9 416 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 FGF21Q9NSA1 209 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 HOXC10Q9NYD6 342 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 UTP6Q9NYH9 597 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SMARCAL1Q9NZC9 954 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 OR6C2Q9NZP2 312 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF319Q9P2F9 582 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SEC14L3Q9UDX4 400 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 EPHA6Q9UF33 1036 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 C19orf25Q9UFG5 118 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 IL36AQ9UHA7 158 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 KIAA1257Q9ULG3 409 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 B9D1Q9UPM9 204 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 SATB2Q9UPW6 733 aa3.79□□□□□ -1.8
VPS13D-207ENST00000476169 TARBP1Q13395 1621 aaKnown RBP3.79□□□□□ -1.8
VPS13D-207ENST00000476169 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 KIF7Q2M1P5 1343 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF521Q96K83 1311 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 IGLV5-37A0A075B6J1 123 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GOLGA6L7A0A1B0GV03 622 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 LINC00854A0A1B0GVQ3 168 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ATP6AP2A0A1C7CYW4 349 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 METTL21EPA6NDL7 271 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ASB14A6NK59 587 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 OR52A4PA6NMU1 304 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 WASH3PC4AMC7 463 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CASC3O15234 703 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 LRRTM2O43300 516 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CACNG3O60359 315 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TXNDC12O95881 172 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 AGTP01019 485 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 VTNP04004 478 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ATP1B1P05026 303 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 LYNP07948 512 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 PNMTP11086 282 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CD59P13987 128 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GP9P14770 177 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ACKR3P25106 362 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TRIM23P36406 574 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CAPGP40121 348 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GRIA1P42261 906 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SYKP43405 635 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 DNA2P51530 1060 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 PRMT2P55345 433 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 BRWD1-AS2P59051 145 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SRYQ05066 204 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TGM3Q08188 693 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 RBM39Q14498 530 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 NFATC4Q14934 902 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 HERC3Q15034 1050 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TAF13Q15543 124 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CLPPQ16740 277 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 DCAF10Q5QP82 559 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF425Q6IV72 752 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CAPN13Q6MZZ7 669 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 C11orf87Q6NUJ2 197 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 WASH2PQ6VEQ5 465 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CYP4V2Q6ZWL3 525 aaPredicted RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SLC24A5Q71RS6 500 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ANO5Q75V66 913 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GOLGA7Q7Z5G4 137 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GPBP1Q86WP2 473 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 KMT5CQ86Y97 462 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CBWD2Q8IUF1 395 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 EFCAB13Q8IY85 973 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ELMOD1Q8N336 334 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 PARP8Q8N3A8 854 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF321PQ8N8H1 164 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 NIPA2Q8N8Q9 360 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ZNF114Q8NC26 417 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 ADAD2Q8NCV1 583 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 DDHD1Q8NEL9 900 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 OR7A2PQ8NGA2 310 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 OR52N5Q8NH56 324 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 WDR36Q8NI36 951 aaKnown RBP3.78□□□□□ -1.8
VPS13D-207ENST00000476169 SLC22A8Q8TCC7 542 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 RAET1EQ8TD07 263 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 GPR148Q8TDV2 347 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 TCP11Q8WWU5 503 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 NEDD4LQ96PU5 975 aa3.78□□□□□ -1.8
VPS13D-207ENST00000476169 CITED1Q99966 193 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms