RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PIK3CD-AS1Q5SR53 167 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 MARCH8Q5T0T0 291 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SPOUT1Q5T280 376 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 GPR157Q5UAW9 335 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 RAET1LQ5VY80 246 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TTC23Q5W5X9 447 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SNRNP48Q6IEG0 339 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TEX38Q6PEX7 206 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 WASH2PQ6VEQ5 465 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 RTL4Q6ZR62 310 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZBTB49Q6ZSB9 765 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 USP43Q70EL4 1123 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ERASQ7Z444 233 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF677Q86XU0 584 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 RBM45Q8IUH3 476 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 FOXP4Q8IVH2 680 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 KLHDC8AQ8IYD2 350 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 C10orf67Q8IYJ2 551 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 IQCKQ8N0W5 287 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D19Q8N5T2 526 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 DNAAF1Q8NEP3 725 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 OR4A15Q8NGL6 344 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 KCNG3Q8TAE7 436 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 GRHL3Q8TE85 626 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TMEM174Q8WUU8 243 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 LZICQ8WZA0 190 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PHYHIPQ92561 330 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 HAS2Q92819 552 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 FAM46BQ96A09 425 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 NXNL1Q96CM4 212 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 DUS3LQ96G46 650 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CDKN2AIPNLQ96HQ2 116 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 MEIS3Q99687 375 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ROPN1BQ9BZX4 212 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SPATC1LQ9H0A9 340 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZMYND12Q9H0C1 365 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB1BQ9H0U4 201 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SAV1Q9H4B6 383 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ANKRA2Q9H9E1 313 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CALHM2Q9HA72 323 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 KIF9Q9HAQ2 790 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 SGK2Q9HBY8 427 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 KCNK9Q9NPC2 374 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CCNB1IP1Q9NPC3 277 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CHST11Q9NPF2 352 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF302Q9NR11 478 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 KLHL1Q9NR64 748 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TREX1Q9NSU2 369 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZFP57Q9NU63 452 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ZCCHC3Q9NUD5 404 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PIGVQ9NUD9 493 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 TXLNGQ9NUQ3 528 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 MED17Q9NVC6 651 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 MTCH1Q9NZJ7 389 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ADAM22Q9P0K1 906 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 STOX2Q9P2F5 926 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 CLEC2DQ9UHP7 191 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 DTX4Q9Y2E6 619 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 RBMX2Q9Y388 322 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 PCDHGB1Q9Y5G3 927 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 FHOD3Q2V2M9 1422 aa4.51□□□□□ -1.69
CCDC88A-210ENST00000468534 ABCC4O15439 1325 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ELP1O95163 1332 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CDHR2Q9BYE9 1310 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 A0A0U1RRA0 63 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 SMCO2A6NFE2 343 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 DYNC1I1O14576 645 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 AIM2O14862 343 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 KLF11O14901 512 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ADAM12O43184 909 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 LCMT2O60294 686 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 FCGR3BO75015 233 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NKX2-2O95096 273 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 BMP10O95393 424 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ZBTB11O95625 1053 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 STSP08842 583 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CD3GP09693 182 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CCNB1P14635 433 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ZNF18P17022 549 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 PSMB4P28070 264 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GNA11P29992 359 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CDAP32320 146 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GTF2H1P32780 548 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 FEN1P39748 380 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 GSTM5P46439 218 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CLCN3P51790 818 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 BDH1Q02338 343 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 FOLH1Q04609 750 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 CDK18Q07002 472 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ZFP36L1Q07352 338 aaKnown RBP4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 DMWDQ09019 674 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TNK1Q13470 666 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 SELPLGQ14242 412 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 FGFBP1Q14512 234 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TGFBIQ15582 683 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NAB2Q15742 525 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 ADPRMQ3LIE5 342 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 AMZ1Q400G9 498 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 TXNDC8Q6A555 127 aa4.5□□□□□ -1.69
CCDC88A-210ENST00000468534 NADSYN1Q6IA69 706 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms