RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TRIM71Q2Q1W2 868 aaKnown RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CCSMST1Q4G0I0 132 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 NCEH1Q6PIU2 408 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 POP5Q969H6 163 aaKnown RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 LRR1Q96L50 414 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CD84Q9UIB8 345 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 NCKAP1Q9Y2A7 1128 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 KCNE2Q9Y6J6 123 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 MYO10Q9HD67 2058 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GLYATL1P3A0A0U1RQE8 302 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 OR1G1P47890 313 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 LIMS1P48059 325 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 VSX2P58304 361 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TEAD4Q15561 434 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CCL14Q16627 93 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CRB2Q5IJ48 1285 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF770Q6IQ21 691 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TNFAIP8L2Q6P589 184 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 USP45Q70EL2 814 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 KRT74Q7RTS7 529 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 DUSP18Q8NEJ0 188 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SUSD3Q96L08 255 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SPNS1Q9H2V7 528 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 MVB12BQ9H7P6 319 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 NUDT15Q9NV35 164 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TRPM5Q9NZQ8 1165 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 LINC00862A6NCI5 91 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 M0QZ92 97 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SMAD6O43541 496 aaKnown RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ACSL4O60488 711 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GJA1P17302 382 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 PTNP21246 168 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CHI3L1P36222 383 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 MAP2K6P52564 334 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ABRQ12979 859 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TUSC3Q13454 348 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 HEPACAMQ14CZ8 416 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GDPGP1Q6ZNW5 385 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CLDN22Q8N7P3 220 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GPR26Q8NDV2 337 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 PROKR2Q8NFJ6 384 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TOR1AIP2Q8NFQ8 470 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 OTUB1Q96FW1 271 aaPredicted RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 TOE1Q96GM8 510 aaKnown RBP11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ART5Q96L15 291 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 GPR137Q96N19 417 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ATF6BQ99941 703 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ADAM2Q99965 735 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SAP130Q9H0E3 1048 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SLCO1C1Q9NYB5 712 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 SLC9A8Q9Y2E8 581 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 ENPP4Q9Y6X5 453 aa11.14□□□□□ -0.63
CPSF3-202ENST00000460593 CHD5Q8TDI0 1954 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 TEX51A0A1B0GUA7 166 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 DPM1O60762 260 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 RAF1P04049 648 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HIST1H2AGP0C0S8 130 aaPredicted RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HIST1H2ADP20671 130 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HNF1BP35680 557 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 ETV3P41162 512 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 B4GALNT1Q00973 533 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 TLE2Q04725 743 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 ZNF177Q13360 481 aaPredicted RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 NCF4Q15080 339 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 ACSM5Q6NUN0 579 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HSDL2Q6YN16 418 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 TMEM91Q6ZNR0 172 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 OR4D11Q8NGI4 311 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 GEMIN6Q8WXD5 167 aaKnown RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 MRPS31Q92665 395 aaKnown RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 RAB8BQ92930 207 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 MYO19Q96H55 970 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HIST1H2AHQ96KK5 128 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HIST1H2AJQ99878 128 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 H2AFJQ9BTM1 129 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 POLR2J3Q9H1A7 115 aaKnown RBP11.13□□□□□ -0.63
CPSF3-202ENST00000460593 FZD3Q9NPG1 666 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 DNAJC11Q9NVH1 559 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 PADI3Q9ULW8 664 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 RPS10-NUDT3A0A1W2PQS6 291 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 SLC43A1O75387 559 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 IGLV3-27P01718 113 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 OSMP13725 252 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 ELK1P19419 428 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 TYMPP19971 482 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 PSMA3P25788 255 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 CPT1AP50416 773 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 CLCNKAP51800 687 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 PFN3P60673 137 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 PCDH1Q08174 1060 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 MPEG1Q2M385 716 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 CERS6Q6ZMG9 384 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 MARCH9Q86YJ5 346 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 FBXW5Q969U6 566 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 SGK2Q9HBY8 427 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 EXTL2Q9UBQ6 330 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 LHX3Q9UBR4 397 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 HCN2Q9UL51 889 aa11.13□□□□□ -0.63
CPSF3-202ENST00000460593 RPL36Q9Y3U8 105 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms