RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 OR5M3Q8NGP4 307 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 OR10Q1Q8NGQ4 319 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 HUS1BQ8NHY5 278 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 FBF1Q8TES7 1133 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 RIT1Q92963 219 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 EXT2Q93063 718 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TP53INP1Q96A56 240 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 ESAMQ96AP7 390 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 DTNBP1Q96EV8 351 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 ATOH8Q96SQ7 321 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 MAPKAP1Q9BPZ7 522 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 TREX2Q9BQ50 279 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 TTTY12Q9BZ98 90 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 EXO5Q9H790 373 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 NMRK1Q9NWW6 199 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 KCNN3Q9UGI6 736 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 ZNF223Q9UK11 482 aaPredicted RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 ACAD8Q9UKU7 415 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 PSME2Q9UL46 239 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 CLDN16Q9Y5I7 305 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 IKBKGQ9Y6K9 419 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.55□□□□□ -1.36
VPS41-208ENST00000448833 CELSR1Q9NYQ6 3014 aa6.55□□□□□ -1.36
VPS41-208ENST00000448833 FBN2P35556 2912 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TRGV5A0A0B4J1U4 118 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ANKRD33BA6NCL7 494 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 NPIPA2E9PIF3 369 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 NPIPA3F8WFD2 350 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TGFBR3LH3BV60 316 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 UBXN8O00124 270 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PROM1O43490 865 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PRAMEF4O60810 478 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 KLHL2O95198 593 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 SNX4O95219 450 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 CLDN9O95484 217 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TBX6O95947 436 aaPredicted RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 C2P06681 752 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 RBP1P09455 135 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 SLC35E2P0CK97 266 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 COL6A2P12110 1019 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 CD22P20273 847 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 CNTFP26441 200 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PIK3R1P27986 724 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TYK2P29597 1187 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 RFC3P40938 356 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZFP36L2P47974 494 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SERPINB8P50452 374 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 GPX6P59796 221 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ETF1P62495 437 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 KCNJ2P63252 427 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TNFRSF17Q02223 184 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 FOLH1Q04609 750 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 DDX39BQ13838 428 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SETDB1Q15047 1291 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PCBP2Q15366 365 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SPRED3Q2MJR0 410 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZNF750Q32MQ0 723 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZNF791Q3KP31 576 aaPredicted RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SLC25A35Q3KQZ1 300 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PRAMEF9Q5VWM5 478 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 HLA-DQA1Q5Y7H0 255 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 TMEM198Q66K66 360 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 B3GNT6Q6ZMB0 384 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 C3P1Q6ZMU1 363 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 RNF111Q6ZNA4 994 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 FGD2Q7Z6J4 655 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 UBE3DQ7Z6J8 389 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PM20D2Q8IYS1 436 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 FBXW8Q8N3Y1 598 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 LIX1Q8N485 282 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ACBD4Q8NC06 268 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 FBXO25Q8TCJ0 367 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 PAQR8Q8TEZ7 354 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZNF721Q8TF20 911 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ATP6V1E2Q96A05 226 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ANKRD9Q96BM1 317 aaPredicted RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 NXNL1Q96CM4 212 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 KCTD12Q96CX2 325 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SPACA9Q96E40 222 aaPredicted RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 SCYL1Q96KG9 808 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 SMC6Q96SB8 1091 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 SECISBP2Q96T21 854 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 CSF3RQ99062 836 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 SERPINI1Q99574 410 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZNF559Q9BR84 538 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 OR51B5Q9H339 312 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 DDX31Q9H8H2 851 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 IPPKQ9H8X2 491 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ZFP64Q9NPA5 681 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 ACKR4Q9NPB9 350 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 DMRT3Q9NQL9 472 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 DEPPQ9NTK1 212 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 GRHL1Q9NZI5 618 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 MTRF1LQ9UGC7 380 aaKnown RBP6.54□□□□□ -1.36
VPS41-208ENST00000448833 RNF6Q9Y252 685 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 CFL2Q9Y281 166 aa6.54□□□□□ -1.36
VPS41-208ENST00000448833 A0A096LPK6 155 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 C2orf92A0A1B0GVN3 265 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 ATP6AP2A0A1C7CYW4 349 aa6.53□□□□□ -1.36
VPS41-208ENST00000448833 GOLGA6L10A6NI86 522 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms