RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TP53I11O14683 189 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 SCO2O43819 266 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 AHSA1O95433 338 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 IFI30P13284 250 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 PTNP21246 168 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 RORAP35398 523 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 RCAN2Q14206 197 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MYBPC3Q14896 1274 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ALG1LQ6GMV1 187 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 CGB2Q6NT52 195 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FRRS1Q6ZNA5 592 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 FAM160A2Q8N612 972 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 OR1E3Q8WZA6 343 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 RPP25Q9BUL9 199 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 LGR4Q9BXB1 951 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 ALOXE3Q9BYJ1 711 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 EHD3Q9NZN3 535 aa7.05□□□□□ -1.28
SYNE1-213ENST00000448038 MRPS7Q9Y2R9 242 aaKnown RBP7.05□□□□□ -1.28
SYNE1-213ENST00000448038 A0A1B0GVT2 93 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM202A6NGA9 273 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF726A6NNF4 738 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ANHXE9PGG2 379 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 AK1P00568 194 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CTSLP07711 333 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF3P17036 446 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 PSMA1P25786 263 aaKnown RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 GSTT1P30711 240 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ALDH3A2P51648 485 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SMSP52788 366 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 DPTQ07507 201 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 KLHL22Q53GT1 634 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZCCHC12Q6PEW1 402 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 NANOGNBQ7Z5D8 188 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 IL17RCQ8NAC3 791 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 RPL36Q9Y3U8 105 aaKnown RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 GPR45Q9Y5Y3 372 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 POM121BA6NF01 834 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 NME4O00746 187 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 OR7A17O14581 309 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 KLHL18O94889 574 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SOX14O95416 240 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CH25HO95992 272 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 UGT2B7P16662 529 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TUBB3Q13509 450 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CAMK1Q14012 370 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SERTAD2Q14140 314 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TNFAIP8L3Q5GJ75 292 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM207Q6UWW9 146 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SYNPOQ8N3V7 929 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MAL2Q969L2 176 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ISL2Q96A47 359 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SH3GL3Q99963 347 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MAPKAP1Q9BPZ7 522 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SMURF2Q9HAU4 748 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MYNNQ9NPC7 610 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CCM2LQ9NUG4 571 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM45AQ9NWC5 275 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 MKLN1Q9UL63 735 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 NAALAD2Q9Y3Q0 740 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 LOC100130705A0A1B0GUX0 176 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 HMX2A2RU54 273 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CASKO14936 926 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 LSM1O15116 133 aaKnown RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CPNE3O75131 537 aaKnown RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 H6PDO95479 791 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 HSD17B1P14061 328 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 AHRP35869 848 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 KIAA1024LP59773 190 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 COLEC12Q5KU26 742 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 HSDL2Q6YN16 418 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZBTB46Q86UZ6 589 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 LSMEM2Q8N112 164 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM19Q96HH6 336 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 EGLN2Q96KS0 407 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 PLA2G2FQ9BZM2 168 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TPK1Q9H3S4 243 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 SPIN1Q9Y657 262 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 GABRR3A8MPY1 467 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 C5orf67F2Z3F1 127 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 BLOC1S5-TXNDC5H3BN57 136 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TNFRSF10CO14798 259 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 VNN2O95498 520 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 PEX11BO96011 259 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 HIST1H1TP22492 207 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 OTX2P32243 289 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 GPR18Q14330 331 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 CCSMST1Q4G0I0 132 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 PIGGQ5H8A4 983 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 LAPTM4BQ86VI4 370 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 OR5L2Q8NGL0 311 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 OR9A2Q8NGT5 310 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 TSSK6Q9BXA6 273 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ACTRT3Q9BYD9 372 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 ZBTB20Q9HC78 741 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 NLGN3Q9NZ94 848 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 BTNL2Q9UIR0 455 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 DKKL1Q9UK85 242 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 COMMD3-BMI1R4GMX3 469 aa7.04□□□□□ -1.28
SYNE1-213ENST00000448038 RNASET2O00584 256 aaKnown RBP7.04□□□□□ -1.28
SYNE1-213ENST00000448038 FZD6O60353 706 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms