RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RPUSD3Q6P087 351 aaKnown RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 HSDL2Q6YN16 418 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 CISD2Q8N5K1 135 aaKnown RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 C1orf52Q8N6N3 182 aaKnown RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 NFAM1Q8NET5 270 aaPredicted RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 OR5L2Q8NGL0 311 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 OR6Y1Q8NGX8 325 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 MIB2Q96AX9 1013 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 C5orf34Q96MH7 638 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 HBEGFQ99075 208 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 ZNF717Q9BY31 904 aaPredicted RBP15.28■□□□□ 0.04
SF3A1-204ENST00000447376 CLMPQ9H6B4 373 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 TRAF6Q9Y4K3 522 aa15.28■□□□□ 0.04
SF3A1-204ENST00000447376 GNG14A0A1W2PPG7 69 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 C1orf226A1L170 272 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 GLOD5A6NK44 160 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TGFBR3LH3BV60 316 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 SLC28A1O00337 649 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 PRAMEF2O60811 474 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 AIFM1O95831 613 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 F10P00742 488 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CHRNGP07510 517 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CD46P15529 392 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TPP2P29144 1249 aaPredicted RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 FOXA1P55317 472 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 ABCE1P61221 599 aaKnown RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TRA2BP62995 288 aaKnown RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 IGFBP7Q16270 282 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 SH2D4BQ5SQS7 431 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 NDUFAF5Q5TEU4 345 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 ATG16L1Q676U5 607 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CLEC6AQ6EIG7 209 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TRIM46Q7Z4K8 759 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 OR4N5Q8IXE1 308 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 ST13P4Q8IZP2 240 aaPredicted RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 KIF2BQ8N4N8 673 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TMEM156Q8N614 296 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TMEM178AQ8NBL3 297 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 FAM98AQ8NCA5 519 aaKnown RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 APCDD1LQ8NCL9 501 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 GALNT11Q8NCW6 608 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CATSPER1Q8NEC5 780 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 OR4K14Q8NGD5 310 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 RAB3IL1Q8TBN0 382 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 TMEM125Q96AQ2 219 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 ANKRD9Q96BM1 317 aaPredicted RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 SNRNP40Q96DI7 357 aaKnown RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CCT7Q99832 543 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 MCM8Q9UJA3 840 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 PPIEQ9UNP9 301 aaKnown RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.27■□□□□ 0.04
SF3A1-204ENST00000447376 FIS1Q9Y3D6 152 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 CSAG2Q9Y5P2 127 aa15.27■□□□□ 0.04
SF3A1-204ENST00000447376 MYOCOSA0A1B0GUC4 107 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 A0A1W2PR48 441 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 PYCARD-AS1I3L0S3 204 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 RGS14O43566 566 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 SASH3O75995 380 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 BGNP21810 368 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 SERPINB3P29508 390 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 GSTM5P46439 218 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 SLC1A6P48664 564 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 CYB561P49447 251 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 HTR6P50406 440 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 WDR4P57081 412 aaKnown RBP15.26■□□□□ 0.03
SF3A1-204ENST00000447376 IGLV3-21P80748 117 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-204ENST00000447376 TUBA3CQ13748 450 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 OR1C1Q15619 314 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 HSP90B2PQ58FF3 399 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 TTMPQ5BVD1 217 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 KANK2Q63ZY3 851 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 TUBA3EQ6PEY2 450 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 RNF165Q6ZSG1 346 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 OR8K3Q8NH51 312 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 SLC2A12Q8TD20 617 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 THAP3Q8WTV1 239 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-204ENST00000447376 PTPMT1Q8WUK0 201 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-204ENST00000447376 ACPTQ9BZG2 426 aa15.26■□□□□ 0.03
SF3A1-204ENST00000447376 TEX10Q9NXF1 929 aaPredicted RBP15.26■□□□□ 0.03
SF3A1-204ENST00000447376 ATP8B1O43520 1251 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 PCDH7O60245 1069 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 PRKRAO75569 313 aaKnown RBP15.25■□□□□ 0.03
SF3A1-204ENST00000447376 RSL1D1O76021 490 aaKnown RBP15.25■□□□□ 0.03
SF3A1-204ENST00000447376 RASAL1O95294 804 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 CRYABP02511 175 aaKnown RBP15.25■□□□□ 0.03
SF3A1-204ENST00000447376 SLC35E2P0CK97 266 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 ALDH9A1P49189 494 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 SSR4P51571 173 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 MLF1P58340 268 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 HMGCS1Q01581 520 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 BTKQ06187 659 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 TBL3Q12788 808 aaKnown RBP15.25■□□□□ 0.03
SF3A1-204ENST00000447376 HEPACAMQ14CZ8 416 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 ZNF766Q5HY98 468 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 SCIMPQ6UWF3 145 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 DDIASQ8IXT1 998 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 BCORP1Q8N888 145 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 CHTF18Q8WVB6 975 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 DYDC1Q8WWB3 177 aa15.25■□□□□ 0.03
SF3A1-204ENST00000447376 RIT1Q92963 219 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms