RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 TMCO1Q9UM00 188 aa17.07■□□□□ 0.32
AC004540.1-201ENST00000439120 RNF11Q9Y3C5 154 aa17.07■□□□□ 0.32
AC004540.1-201ENST00000439120 GLOD5A6NK44 160 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 NPIPA2E9PIF3 369 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 NPIPA3F8WFD2 350 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 PROM1O43490 865 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 SMIM24O75264 130 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 EEDO75530 441 aaKnown RBP17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 GPR75O95800 540 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 RBP1P09455 135 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 FAM58BPP0C7Q3 252 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 CCL3P10147 92 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 ELAVL4P26378 380 aaKnown RBP17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 DNASE1L1P49184 302 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 PIGGQ5H8A4 983 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 TTC19Q6DKK2 380 aaPredicted RBP17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 RNF111Q6ZNA4 994 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 C9orf40Q8IXQ3 194 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 FAM109AQ8N4B1 249 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 L3MBTL4Q8NA19 623 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 OR5M3Q8NGP4 307 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 IFT81Q8WYA0 676 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 ZNF592Q92610 1267 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 RND1Q92730 232 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 RIT1Q92963 219 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 PHF21BQ96EK2 531 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 GPR78Q96P69 363 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 SMC6Q96SB8 1091 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 CDC42EP4Q9H3Q1 356 aaKnown RBP17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 LDAHQ9H6V9 325 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 NOL11Q9H8H0 719 aaKnown RBP17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 ZDHHC11Q9H8X9 412 aa17.06■□□□□ 0.32
AC004540.1-201ENST00000439120 A0A0A6YYD5 115 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 FOXE1O00358 373 aaPredicted RBP17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 KRT38O76015 456 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 IGKV3-11P04433 115 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SSTR2P30874 369 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 BSGP35613 385 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 MAGEA5P43359 124 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SERPINB9P50453 376 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 NEK2P51955 445 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 HERVK_113P63132 956 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ERVK-8P63133 956 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 TBL3Q12788 808 aaKnown RBP17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ZNF267Q14586 743 aaPredicted RBP17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 TSNAXIP1Q2TAA8 658 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SLC22A10Q63ZE4 541 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 RELL1Q8IUW5 271 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 DND1Q8IYX4 353 aaKnown RBP17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SLC15A4Q8N697 577 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 TMEM251Q8N6I4 163 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 FAM13CQ8NE31 585 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 CHTF18Q8WVB6 975 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SLC44A1Q8WWI5 657 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 CDK15Q96Q40 435 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 PAFAH2Q99487 392 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 FMO2Q99518 471 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 SERPINI1Q99574 410 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ERVK-6Q9BXR3 956 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 TRIM8Q9BZR9 551 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 EXO5Q9H790 373 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 DDX31Q9H8H2 851 aaKnown RBP17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 PSD3Q9NYI0 1048 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ERVK-19Q9WJR5 959 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ASB4Q9Y574 426 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 CACNA1CQ13936 2221 aa17.05■□□□□ 0.32
AC004540.1-201ENST00000439120 ATP6AP2A0A1C7CYW4 349 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 A0A1W2PR48 441 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 OR14I1A6ND48 311 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 FIGNL2A6NMB9 653 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 HRKO00198 91 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 BCKDKO14874 412 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 TMPRSS11DO60235 418 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 ZNF354AO60765 605 aaPredicted RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 ATP6AP2O75787 350 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 GLSO94925 669 aaPredicted RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 AIFM1O95831 613 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 CHRNB4P30926 498 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 KIR3DL1P43629 444 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 KCNJ2P63252 427 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 IFT88Q13099 833 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 SPRED3Q2MJR0 410 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 C6orf163Q5TEZ5 329 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 OR52E8Q6IFG1 317 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 MRM1Q6IN84 353 aaKnown RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 MEX3BQ6ZN04 569 aaKnown RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 DGAT2L6Q6ZPD8 337 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 ACAD11Q709F0 780 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 PLD6Q8N2A8 252 aaKnown RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 MNS1Q8NEH6 495 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 WDR20Q8TBZ3 569 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 DOK4Q8TEW6 326 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 SPACA9Q96E40 222 aaPredicted RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 LURAP1Q96LR2 239 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 SPOCK3Q9BQ16 436 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 ZNF717Q9BY31 904 aaPredicted RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 ZNF358Q9NW07 568 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 TUBA8Q9NY65 449 aaPredicted RBP17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 AHSPQ9NZD4 102 aa17.04■□□□□ 0.32
AC004540.1-201ENST00000439120 XPR1Q9UBH6 696 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms