RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TSPYL5Q86VY4 417 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 PARGQ86W56 976 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 HIPK1Q86Z02 1210 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 NRSN1Q8IZ57 195 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 UBE2J2Q8N2K1 259 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZFP41Q8N8Y5 198 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZBTB8BQ8NAP8 495 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 C11orf65Q8NCR3 313 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 PJA1Q8NG27 643 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 OR10G2Q8NGC3 310 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 OR52E1Q8NGJ3 308 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZNF420Q8TAQ5 688 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 SLC9A6Q92581 669 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 NACC2Q96BF6 587 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 TMEM19Q96HH6 336 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ART5Q96L15 291 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZBTB20Q9HC78 741 aaPredicted RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 FAM120CQ9NX05 1096 aaKnown RBP7.95□□□□□ -1.14
CD44-208ENST00000428726 MAPRE3Q9UPY8 281 aa7.95□□□□□ -1.14
CD44-208ENST00000428726 ZFHX4Q86UP3 3567 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 MDC1Q14676 2089 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 A8MV72 311 aaPredicted RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 PSMD11O00231 422 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 RNGTTO60942 597 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 IMPDH2P12268 514 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 DCKP27707 260 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ACADLP28330 430 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 GTF2E2P29084 291 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 BCL6P41182 706 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 CTSKP43235 329 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 GP2P55259 537 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 C21orf58P58505 322 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ALDH6A1Q02252 535 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 ELP6Q0PNE2 266 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 MED22Q15528 200 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 INAQ16352 499 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 NDUFAF5Q5TEU4 345 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ERICH5Q6P6B1 374 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ZNF773Q6PK81 442 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 FAM92BQ6ZTR7 304 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 C6orf120Q7Z4R8 191 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ADCK1Q86TW2 530 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 PRSS58Q8IYP2 241 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 OR8J2Q8NGG1 315 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 OR13F1Q8NGS4 319 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 OR2L2Q8NH16 312 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 SLC38A5Q8WUX1 472 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ZFPM2Q8WW38 1151 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 PPP1R16AQ96I34 528 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 BBS4Q96RK4 519 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 TUBA1CQ9BQE3 449 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 CHCHD6Q9BRQ6 235 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 YIPF2Q9BWQ6 316 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 SLC17A9Q9BYT1 436 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 MVB12BQ9H7P6 319 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 BRF2Q9HAW0 419 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 FAM32AQ9Y421 112 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 H3BSH0 61 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 SDC3O75056 442 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 CLPXO76031 633 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 HNRNPA1P09651 372 aaKnown RBP eCLIP7.94□□□□□ -1.14
CD44-208ENST00000428726 NR2F1P10589 423 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 MVDP53602 400 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 LIM2P55344 173 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 HYAL1Q12794 435 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 NPRL3Q12980 569 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 RFX4Q33E94 735 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 GCNT6Q5T4J0 391 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 KIAA1614Q5VZ46 1190 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 FCRLBQ6BAA4 426 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 SLC9B2Q86UD5 537 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 WFIKKN2Q8TEU8 576 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 PHF10Q8WUB8 498 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 CNDP2Q96KP4 475 aaKnown RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 EPHX3Q9H6B9 360 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 ADPRHL2Q9NX46 363 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 TAS2R9Q9NYW1 312 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 PSME2Q9UL46 239 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 KIF26AQ9ULI4 1882 aaPredicted RBP7.94□□□□□ -1.14
CD44-208ENST00000428726 SDK2Q58EX2 2172 aa7.94□□□□□ -1.14
CD44-208ENST00000428726 PRAMEF27A3QJZ7 478 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CCDC85CA6NKD9 419 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 K7EQS6 105 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 FCMRO60667 390 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 SERPINI2O75830 405 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 APODP05090 189 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 GPX2P18283 190 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 MAGEA2P43356 314 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ASMTP46597 345 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 TPTEP56180 551 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 CSTF1Q05048 431 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 PUM1Q14671 1186 aaKnown RBP eCLIP7.93□□□□□ -1.14
CD44-208ENST00000428726 SEC23BQ15437 767 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 ADPRMQ3LIE5 342 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 KHDRBS2Q5VWX1 349 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 OTPQ5XKR4 325 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 OR9A2Q8NGT5 310 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 RPLP0P6Q8NHW5 317 aa7.93□□□□□ -1.14
CD44-208ENST00000428726 HDAC2Q92769 488 aaKnown RBP7.93□□□□□ -1.14
CD44-208ENST00000428726 TBC1D20Q96BZ9 403 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms